Wall clock time and date at job start Mon Mar 30 2020 20:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47415 * 2 1 4 4 C 1.34230 * 125.06027 * 124.99592 * 3 2 1 5 5 C 1.38526 * 107.72645 * 179.97438 * 4 3 2 6 6 C 1.40866 * 134.75445 * 180.02562 * 5 4 3 7 7 C 1.37521 * 120.66398 * 180.02562 * 6 5 4 8 8 C 1.38141 * 122.51048 * 359.73910 * 7 6 5 9 9 C 1.40415 * 121.19606 * 0.53037 * 8 7 6 10 10 C 1.40208 * 120.73787 * 179.76331 * 9 8 7 11 11 H 1.07997 * 119.99703 * 208.31443 * 10 9 8 12 12 C 1.40006 * 120.00450 * 28.31287 * 10 9 8 13 13 N 1.30837 * 120.00214 * 197.92992 * 12 10 9 14 14 Si 1.86801 * 119.99976 * 17.92985 * 12 10 9 15 15 H 1.48506 * 109.47061 * 270.00114 * 14 12 10 16 16 H 1.48505 * 109.47041 * 29.99802 * 14 12 10 17 17 H 1.48496 * 109.47318 * 149.99867 * 14 12 10 18 18 C 1.47074 * 106.26185 * 0.02562 * 5 4 3 19 19 N 1.31240 * 107.04142 * 359.97438 * 18 5 4 20 20 H 1.09002 * 109.46696 * 59.99335 * 1 2 3 21 21 H 1.09003 * 109.47118 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47062 * 299.99456 * 1 2 3 23 23 H 1.09003 * 109.46622 * 240.00366 * 2 1 3 24 24 H 1.09001 * 109.47121 * 120.00989 * 2 1 3 25 25 H 1.07995 * 126.13863 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.67201 * 359.97438 * 6 5 4 27 27 H 1.08000 * 118.74718 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.40681 * 180.27342 * 8 7 6 29 29 H 0.96995 * 119.99733 * 355.44284 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8696 1.8980 0.9001 5 6 3.0877 3.2235 0.5616 6 6 3.8598 4.2708 1.1014 7 6 3.8633 5.5143 0.5141 8 6 3.1287 5.8018 -0.6199 9 6 2.3227 4.8277 -1.2308 10 6 1.5773 5.1314 -2.3788 11 1 0.6588 4.6009 -2.5822 12 6 2.0235 6.1224 -3.2614 13 7 1.1933 6.6546 -4.1213 14 14 3.8041 6.6847 -3.2115 15 1 3.9385 7.8191 -2.2625 16 1 4.6658 5.5608 -2.7646 17 1 4.2236 7.1213 -4.5674 18 6 2.2832 3.4788 -0.6428 19 7 1.6673 2.3583 -0.9385 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 3.3060 1.3745 1.7378 26 1 4.4544 4.0957 1.9858 27 1 4.4663 6.2948 0.9541 28 1 3.1719 6.7949 -1.0421 29 1 0.2867 6.3172 -4.1927 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194797.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:19 Heat of formation + Delta-G solvation = 78.982814 kcal Electronic energy + Delta-G solvation = -13830.661113 eV Core-core repulsion = 11526.792913 eV Total energy + Delta-G solvation = -2303.868200 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05965 -36.24310 -33.92741 -33.00883 -30.89243 -28.87274 -28.00853 -24.61066 -23.75283 -21.08445 -20.81493 -19.17884 -18.06948 -16.11295 -15.97906 -14.85683 -14.80683 -13.87401 -13.69172 -13.49216 -12.70474 -12.43920 -12.33203 -12.03909 -11.78529 -11.30411 -11.06784 -10.75119 -10.66745 -10.15602 -9.85562 -9.54403 -9.27263 -9.13624 -8.81086 -7.61777 -7.45071 -6.69189 -4.40750 1.82230 3.10862 3.14727 3.20971 3.29701 3.58301 3.63997 4.01129 4.55897 4.78907 5.12710 5.27580 5.37494 5.40071 5.60594 5.66960 5.92068 6.16104 6.22633 6.40815 6.51429 6.77092 6.99765 7.20258 7.34241 7.54298 7.69887 7.77907 7.98426 8.08691 8.34416 8.43213 8.51004 8.86338 9.82235 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.010332 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.600549 B = 2709.474574 C = 3339.016995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 N -0.358 5.358 4 C -0.019 4.019 5 C -0.131 4.131 6 C -0.247 4.247 7 C -0.036 4.036 8 C -0.333 4.333 9 C 0.137 3.863 10 C -0.457 4.457 11 H 0.083 0.917 12 C 0.040 3.960 13 N -0.793 5.793 14 Si 1.085 2.915 15 H -0.273 1.273 16 H -0.260 1.260 17 H -0.294 1.294 18 C 0.078 3.922 19 N -0.289 5.289 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -8.142 5.849 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.141 5.141 4 C -0.166 4.166 5 C -0.140 4.140 6 C -0.267 4.267 7 C -0.056 4.056 8 C -0.355 4.355 9 C 0.131 3.869 10 C -0.486 4.486 11 H 0.101 0.899 12 C -0.182 4.182 13 N -0.414 5.414 14 Si 0.911 3.089 15 H -0.200 1.200 16 H -0.184 1.184 17 H -0.222 1.222 18 C -0.082 4.082 19 N -0.114 5.114 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.180 0.820 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.958 -7.822 4.313 9.144 hybrid contribution -0.769 -0.885 1.352 1.790 sum 1.189 -8.707 5.665 10.456 Atomic orbital electron populations 1.22044 0.94335 1.02037 1.03724 1.21496 0.95730 0.78708 1.02852 1.48264 1.35238 1.09714 1.20836 1.22068 1.01250 0.94818 0.98433 1.19426 1.03427 0.92951 0.98239 1.19384 1.09770 0.93073 1.04519 1.20087 0.95958 0.94802 0.94727 1.20255 1.13631 0.98424 1.03235 1.17764 0.91736 0.85485 0.91918 1.20712 1.07054 1.16236 1.04557 0.89877 1.27634 1.07412 0.91349 0.91779 1.70547 1.07727 1.32030 1.31095 0.83382 0.72213 0.78302 0.75030 1.19977 1.18386 1.22184 1.22565 0.96483 0.93310 0.95824 1.77037 1.24450 0.97590 1.12303 0.91012 0.91349 0.92281 0.90468 0.89369 0.82016 0.89265 0.89301 0.87661 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.07 37.16 0.37 -1.71 15 2 C 0.13 1.82 7.17 -4.04 -0.03 1.79 15 3 N -0.36 -7.03 3.63 -60.68 -0.22 -7.25 15 4 C -0.02 -0.38 11.48 -16.40 -0.19 -0.57 15 5 C -0.13 -3.08 6.33 -105.21 -0.67 -3.74 15 6 C -0.25 -5.59 10.09 -38.85 -0.39 -5.98 15 7 C -0.04 -0.84 9.87 -39.88 -0.39 -1.23 15 8 C -0.33 -8.46 7.25 -38.80 -0.28 -8.74 15 9 C 0.14 3.72 5.30 -104.70 -0.56 3.16 15 10 C -0.46 -12.63 9.46 -38.18 -0.36 -12.99 15 11 H 0.08 2.39 8.06 -52.49 -0.42 1.97 15 12 C 0.04 1.05 5.42 -17.31 -0.09 0.96 15 13 N -0.79 -21.01 13.66 55.55 0.76 -20.25 15 14 Si 1.09 24.83 24.90 -169.99 -4.23 20.59 15 15 H -0.27 -5.92 6.44 56.52 0.36 -5.56 15 16 H -0.26 -6.03 7.03 56.52 0.40 -5.63 15 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 18 C 0.08 2.03 7.46 -80.90 -0.60 1.43 15 19 N -0.29 -7.06 12.30 34.41 0.42 -6.64 15 20 H 0.07 1.08 8.13 -51.93 -0.42 0.66 15 21 H 0.07 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.09 0.90 8.04 -51.93 -0.42 0.48 15 25 H 0.16 2.43 8.06 -52.49 -0.42 2.01 15 26 H 0.09 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 28 H 0.11 2.60 4.33 -52.49 -0.23 2.38 15 29 H 0.29 7.44 8.73 -40.82 -0.36 7.08 15 LS Contribution 250.85 15.07 3.78 3.78 Total: -1.00 -30.33 250.85 -5.90 -36.23 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.22 Total: 1.16 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -3.19 Total: -27.62 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.96 Total: -34.14 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.23 Total: 20.59 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.33 -5.90 -36.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194797.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.216 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds