Wall clock time and date at job start Mon Mar 30 2020 20:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35762 * 125.36703 * 2 1 4 4 H 0.97005 * 124.62905 * 0.02570 * 3 2 1 5 5 C 1.37878 * 110.74471 * 179.97438 * 3 2 1 6 6 N 1.32712 * 132.55758 * 180.02562 * 5 3 2 7 7 C 1.31641 * 121.73996 * 180.02562 * 6 5 3 8 8 C 1.38514 * 121.53076 * 359.93712 * 7 6 5 9 9 C 1.38452 * 119.28493 * 0.03267 * 8 7 6 10 10 C 1.50693 * 120.96334 * 180.02562 * 9 8 7 11 11 C 1.39254 * 118.07207 * 359.97438 * 9 8 7 12 12 C 1.38891 * 125.37208 * 179.69439 * 2 1 3 13 13 C 1.40888 * 126.99070 * 359.97438 * 12 2 1 14 14 H 1.07998 * 120.00214 * 221.38239 * 13 12 2 15 15 C 1.39757 * 119.99789 * 41.38181 * 13 12 2 16 16 N 1.31042 * 120.00212 * 20.11131 * 15 13 12 17 17 Si 1.86794 * 119.99928 * 200.11271 * 15 13 12 18 18 H 1.48505 * 109.47474 * 60.00120 * 17 15 13 19 19 H 1.48504 * 109.47390 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47438 * 299.99894 * 17 15 13 21 21 H 1.08991 * 109.47366 * 91.54863 * 1 2 3 22 22 H 1.08999 * 109.47487 * 331.53982 * 1 2 3 23 23 H 1.09005 * 109.47032 * 211.54798 * 1 2 3 24 24 H 1.07996 * 119.23848 * 179.97438 * 7 6 5 25 25 H 1.07997 * 120.35819 * 180.02562 * 8 7 6 26 26 H 1.08996 * 109.47568 * 264.28866 * 10 9 8 27 27 H 1.08999 * 109.47364 * 24.29181 * 10 9 8 28 28 H 1.09009 * 109.47233 * 144.28806 * 10 9 8 29 29 H 0.97000 * 120.00263 * 184.82296 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2928 1.1071 0.0000 4 1 1.9609 2.0186 0.0004 5 6 3.6269 0.7590 0.0006 6 7 4.7422 1.4783 0.0012 7 6 5.9310 0.9128 0.0012 8 6 6.0779 -0.4645 0.0018 9 6 4.9490 -1.2660 0.0017 10 6 5.0650 -2.7685 0.0029 11 6 3.7034 -0.6436 0.0016 12 6 2.3110 -1.1325 0.0060 13 6 1.8841 -2.4752 0.0137 14 1 2.3895 -3.1989 0.6359 15 6 0.8066 -2.8704 -0.7838 16 7 0.4457 -2.1368 -1.8080 17 14 -0.1190 -4.4443 -0.3899 18 1 -0.6982 -4.3498 0.9743 19 1 -1.2098 -4.6378 -1.3789 20 1 0.8151 -5.5969 -0.4523 21 1 -0.3633 -0.0278 -1.0272 22 1 -0.3634 0.9034 0.4897 23 1 -0.3633 -0.8758 0.5377 24 1 6.8121 1.5372 0.0013 25 1 7.0625 -0.9083 0.0022 26 1 4.9916 -3.1395 -1.0194 27 1 6.0265 -3.0584 0.4264 28 1 4.2605 -3.1946 0.6026 29 1 -0.3440 -2.3728 -2.3193 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261203813.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:36 Heat of formation + Delta-G solvation = 49.036274 kcal Electronic energy + Delta-G solvation = -14166.364036 eV Core-core repulsion = 11861.197256 eV Total energy + Delta-G solvation = -2305.166780 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14401 -36.82380 -33.84746 -32.68652 -29.76289 -29.31476 -27.32303 -26.43121 -23.99832 -21.32861 -20.55160 -19.34996 -16.73564 -15.99176 -15.21041 -14.89360 -14.51026 -13.98586 -13.53323 -12.68807 -12.54613 -12.22533 -12.05624 -11.73592 -11.66143 -11.30291 -11.15610 -10.93224 -10.81178 -10.55452 -10.21507 -9.82868 -9.04725 -8.64856 -8.35401 -7.29554 -6.66599 -6.29799 -4.10271 2.11938 2.40526 3.11076 3.18886 3.22761 4.00823 4.09204 4.15313 4.83490 5.25338 5.49484 5.63370 5.93643 6.02794 6.18171 6.32746 6.40001 6.43971 6.58298 6.70788 6.81382 6.85054 7.14210 7.16318 7.28814 7.43477 7.56189 7.92022 8.27942 8.38903 8.74560 9.02347 9.08237 9.18506 10.51898 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034570 B = 0.011600 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.752753 B = 2413.278839 C = 3073.099038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.047 4.047 3 N -0.570 5.570 4 H 0.396 0.604 5 C 0.271 3.729 6 N -0.525 5.525 7 C 0.115 3.885 8 C -0.246 4.246 9 C 0.013 3.987 10 C -0.108 4.108 11 C -0.162 4.162 12 C 0.062 3.938 13 C -0.453 4.453 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.816 5.816 17 Si 0.890 3.110 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.270 1.270 21 H 0.065 0.935 22 H 0.026 0.974 23 H 0.065 0.935 24 H 0.141 0.859 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 0.702 2.330 3.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.151 4.151 3 N -0.175 5.175 4 H 0.231 0.769 5 C 0.036 3.964 6 N -0.240 5.240 7 C -0.050 4.050 8 C -0.269 4.269 9 C 0.005 3.995 10 C -0.165 4.165 11 C -0.171 4.171 12 C 0.056 3.944 13 C -0.485 4.485 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.445 5.445 17 Si 0.716 3.284 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.195 1.195 21 H 0.084 0.916 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.158 0.842 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.496 1.629 2.099 3.645 hybrid contribution -0.504 -1.042 -0.057 1.159 sum 1.992 0.587 2.042 2.912 Atomic orbital electron populations 1.19899 0.89041 0.99291 1.01531 1.20522 0.92139 0.84236 1.18239 1.40900 1.02347 1.07977 1.66267 0.76923 1.18285 0.85038 0.90219 1.02847 1.66304 0.97025 1.41195 1.19485 1.21906 0.92778 0.92367 0.97977 1.21400 0.97877 0.94728 1.12881 1.19598 0.91178 0.95764 0.92990 1.20762 1.01448 0.91578 1.02673 1.20211 0.95301 0.93169 1.08458 1.17593 0.85919 0.92418 0.98469 1.18421 1.14332 0.93006 1.22788 0.90776 1.25527 0.97159 0.97638 0.93090 1.69960 1.22518 1.39045 1.12988 0.86670 0.79646 0.83139 0.78956 1.19367 1.20848 1.19453 0.91646 0.95501 0.91592 0.84196 0.86501 0.91216 0.93038 0.90107 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 8.75 36.00 0.31 -0.55 15 2 C -0.05 -1.13 6.90 -80.61 -0.56 -1.69 15 3 N -0.57 -12.91 5.97 -7.60 -0.05 -12.95 15 4 H 0.40 7.67 8.96 -40.82 -0.37 7.30 15 5 C 0.27 6.52 8.39 -155.33 -1.30 5.22 15 6 N -0.52 -11.70 10.39 -12.26 -0.13 -11.83 15 7 C 0.12 2.23 11.14 -17.53 -0.20 2.03 15 8 C -0.25 -4.69 9.80 -39.40 -0.39 -5.08 15 9 C 0.01 0.27 5.93 -104.17 -0.62 -0.34 15 10 C -0.11 -2.05 9.65 36.00 0.35 -1.70 15 11 C -0.16 -4.05 6.18 -104.87 -0.65 -4.70 15 12 C 0.06 1.61 5.59 -104.85 -0.59 1.03 15 13 C -0.45 -11.70 8.20 -38.01 -0.31 -12.01 15 14 H 0.07 1.86 6.30 -52.49 -0.33 1.53 15 15 C 0.08 1.96 4.26 -17.32 -0.07 1.89 15 16 N -0.82 -21.00 11.00 55.54 0.61 -20.38 15 17 Si 0.89 18.77 29.61 -169.99 -5.03 13.74 15 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 15 21 H 0.07 1.46 7.18 -51.93 -0.37 1.09 15 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 23 H 0.07 1.46 7.36 -51.93 -0.38 1.07 15 24 H 0.14 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 27 H 0.05 0.80 8.07 -51.93 -0.42 0.38 15 28 H 0.08 1.62 5.92 -51.92 -0.31 1.31 15 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 15 LS Contribution 247.59 15.07 3.73 3.73 Total: -1.00 -28.75 247.59 -7.88 -36.63 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.00 Total: 6.96 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -4.02 Total: -15.90 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.44 Total: -45.16 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.75 -7.88 -36.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203813.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.666 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds