Wall clock time and date at job start Mon Mar 30 2020 20:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38542 * 125.49343 * 2 1 4 4 C 1.38930 * 107.56528 * 180.02562 * 3 2 1 5 5 C 1.40801 * 132.96497 * 179.97438 * 4 3 2 6 6 C 1.36066 * 119.22831 * 180.02562 * 5 4 3 7 7 C 1.40471 * 119.58587 * 359.97438 * 6 5 4 8 8 C 1.34938 * 120.43557 * 0.22108 * 7 6 5 9 9 C 1.50694 * 119.66988 * 179.73462 * 8 7 6 10 10 C 1.50701 * 109.47259 * 84.81865 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99917 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00092 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00185 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47025 * 90.00223 * 14 12 10 16 16 H 1.48508 * 109.46938 * 209.99778 * 14 12 10 17 17 H 1.48496 * 109.47335 * 329.99649 * 14 12 10 18 18 N 1.36534 * 120.65657 * 359.55142 * 8 7 6 19 19 N 1.31478 * 125.49430 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.46776 * 269.97926 * 1 2 3 21 21 H 1.09001 * 109.46952 * 29.97949 * 1 2 3 22 22 H 1.08995 * 109.47095 * 149.97890 * 1 2 3 23 23 H 1.07999 * 126.22288 * 0.02562 * 3 2 1 24 24 H 1.07998 * 120.38747 * 0.02562 * 5 4 3 25 25 H 1.07993 * 120.20758 * 179.97438 * 6 5 4 26 26 H 1.08006 * 119.78294 * 180.02562 * 7 6 5 27 27 H 1.09007 * 109.47160 * 204.81616 * 9 8 7 28 28 H 1.09004 * 109.47736 * 324.81596 * 9 8 7 29 29 H 0.97000 * 120.00440 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3115 1.1280 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3852 -0.0013 6 6 6.0216 0.6710 -0.0023 7 6 5.9706 -0.7328 -0.0020 8 6 4.7832 -1.3737 -0.0053 9 6 4.7486 -2.8803 -0.0110 10 6 4.8644 -3.3908 1.4021 11 1 4.9536 -2.6939 2.2224 12 6 4.8554 -4.7474 1.6479 13 7 4.9569 -5.1930 2.8811 14 14 4.7004 -5.9527 0.2292 15 1 6.0535 -6.3041 -0.2719 16 1 4.0112 -7.1821 0.6972 17 1 3.9133 -5.3303 -0.8654 18 7 3.6127 -0.6708 0.0003 19 7 2.2705 -1.0705 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5141 23 1 1.9726 2.1534 0.0004 24 1 4.8876 2.4649 -0.0011 25 1 6.9740 1.1801 -0.0033 26 1 6.8880 -1.3030 -0.0024 27 1 3.8081 -3.2205 -0.4443 28 1 5.5804 -3.2606 -0.6040 29 1 4.9510 -6.1474 3.0541 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232674.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:04 Heat of formation + Delta-G solvation = 91.491108 kcal Electronic energy + Delta-G solvation = -13780.415745 eV Core-core repulsion = 11477.089945 eV Total energy + Delta-G solvation = -2303.325800 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46679 -37.10033 -33.82519 -32.43420 -31.54897 -29.13111 -28.09349 -26.87316 -23.52827 -22.06350 -20.97267 -19.51796 -16.96941 -16.76983 -15.77889 -15.21448 -15.09333 -14.35434 -13.72661 -13.37784 -13.02813 -12.60128 -12.56945 -12.22664 -11.93223 -11.63057 -11.46084 -11.01188 -10.69799 -10.55932 -10.25900 -9.89575 -9.65443 -9.31633 -8.68205 -8.65926 -6.98520 -6.15451 -4.16745 1.35208 1.67979 2.81810 3.16973 3.24050 3.32581 3.36548 3.93090 4.34873 4.74938 4.94623 5.16031 5.30080 5.40463 5.47289 5.61299 5.77616 5.79355 5.95616 6.06147 6.22888 6.30829 6.50792 6.63983 6.73046 6.81079 7.02371 7.13993 7.51655 7.62310 8.16150 8.35595 8.85147 9.42100 10.97091 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.009940 C = 0.008136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.128983 B = 2816.116767 C = 3440.460462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.088 3.912 3 C -0.309 4.309 4 C 0.109 3.891 5 C -0.158 4.158 6 C -0.063 4.063 7 C -0.195 4.195 8 C 0.205 3.795 9 C 0.016 3.984 10 C -0.515 4.515 11 H 0.073 0.927 12 C 0.076 3.924 13 N -0.894 5.894 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.264 1.264 18 N -0.263 5.263 19 N -0.304 5.304 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.145 0.855 24 H 0.137 0.863 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 11.431 -7.363 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.338 4.338 4 C -0.010 4.010 5 C -0.177 4.177 6 C -0.086 4.086 7 C -0.216 4.216 8 C 0.098 3.902 9 C -0.022 4.022 10 C -0.553 4.553 11 H 0.092 0.908 12 C -0.127 4.127 13 N -0.532 5.532 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.188 1.188 18 N -0.029 5.029 19 N -0.128 5.128 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.091 0.909 23 H 0.163 0.837 24 H 0.155 0.845 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.159 9.927 -7.245 12.478 hybrid contribution 0.031 0.225 -0.443 0.498 sum -2.128 10.153 -7.688 12.912 Atomic orbital electron populations 1.20161 0.86714 1.02966 1.02949 1.22203 0.96924 0.90847 0.97061 1.20979 0.89357 0.99215 1.24251 1.19657 0.95919 0.84133 1.01268 1.20346 0.89455 0.99945 1.07998 1.21129 0.98206 0.93909 0.95312 1.20566 0.96798 0.94240 1.10008 1.20822 0.81339 0.96576 0.91458 1.18976 0.99232 0.83936 1.00072 1.20696 1.51912 0.92775 0.89950 0.90843 1.24904 0.94071 0.98030 0.95685 1.69879 1.49656 1.14516 1.19128 0.86814 0.78828 0.80953 0.83075 1.19899 1.20916 1.18811 1.46175 1.05663 1.05051 1.46002 1.77943 0.83252 1.21147 1.30457 0.90471 0.90628 0.90920 0.83704 0.84487 0.84885 0.83079 0.93662 0.93849 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.43 36.01 0.38 -0.54 15 2 C 0.09 1.62 7.15 -82.63 -0.59 1.03 15 3 C -0.31 -5.37 10.83 -39.21 -0.42 -5.79 15 4 C 0.11 2.08 6.81 -84.27 -0.57 1.51 15 5 C -0.16 -2.46 10.11 -39.39 -0.40 -2.86 15 6 C -0.06 -0.94 10.07 -39.52 -0.40 -1.34 15 7 C -0.19 -3.56 9.60 -39.91 -0.38 -3.94 15 8 C 0.21 4.53 6.00 -81.67 -0.49 4.04 15 9 C 0.02 0.38 4.20 -29.04 -0.12 0.26 15 10 C -0.52 -14.79 9.65 -34.44 -0.33 -15.12 15 11 H 0.07 2.33 7.98 -52.49 -0.42 1.91 15 12 C 0.08 2.20 5.47 -17.82 -0.10 2.10 15 13 N -0.89 -27.41 13.96 55.43 0.77 -26.64 15 14 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 15 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 17 H -0.26 -6.30 6.54 56.52 0.37 -5.93 15 18 N -0.26 -5.85 3.90 -7.01 -0.03 -5.88 15 19 N -0.30 -6.89 12.33 33.51 0.41 -6.48 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.15 2.01 8.06 -52.49 -0.42 1.59 15 24 H 0.14 1.64 8.06 -52.49 -0.42 1.21 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.04 15 26 H 0.15 2.49 8.06 -52.48 -0.42 2.06 15 27 H 0.05 1.17 6.99 -51.93 -0.36 0.81 15 28 H 0.04 0.98 7.53 -51.93 -0.39 0.59 15 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 256.21 15.07 3.86 3.86 Total: -1.00 -33.21 256.21 -6.38 -39.59 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.30 Total: -0.55 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.44 Total: -20.65 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 1.16 Total: -38.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.21 -6.38 -39.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232674.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.084 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds