Wall clock time and date at job start Mon Mar 30 2020 20:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 C 1.50690 * 109.47509 * 120.00529 * 2 1 3 5 5 H 1.08003 * 120.00485 * 119.99771 * 4 2 1 6 6 C 1.37879 * 120.00080 * 300.00369 * 4 2 1 7 7 N 1.31515 * 119.99930 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00410 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47108 * 89.99497 * 8 6 4 10 10 H 1.48498 * 109.47065 * 209.99895 * 8 6 4 11 11 H 1.48499 * 109.46611 * 329.99633 * 8 6 4 12 12 C 1.50710 * 109.47089 * 240.00682 * 2 1 3 13 13 N 1.30110 * 124.95352 * 144.97287 * 12 2 1 14 14 C 1.35776 * 109.64342 * 180.02562 * 13 12 2 15 15 C 1.39742 * 133.60260 * 180.02562 * 14 13 12 16 16 C 1.36602 * 119.88886 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.66869 * 359.96303 * 16 15 14 18 18 C 1.37848 * 120.45154 * 359.97438 * 17 16 15 19 19 C 1.38835 * 119.69325 * 0.02562 * 18 17 16 20 20 N 1.36036 * 124.94652 * 325.25628 * 12 2 1 21 21 H 0.97001 * 126.35413 * 0.07650 * 20 12 2 22 22 H 1.09004 * 109.47512 * 59.99717 * 1 2 3 23 23 H 1.09003 * 109.47146 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47502 * 299.99680 * 1 2 3 25 25 H 0.96995 * 120.00379 * 179.97438 * 7 6 4 26 26 H 1.08008 * 120.05201 * 359.96629 * 15 14 13 27 27 H 1.08000 * 119.66422 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.77052 * 180.02562 * 17 16 15 29 29 H 1.08000 * 120.15985 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4826 7 7 0.9435 0.8299 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5442 4.4117 10 1 1.3445 -0.9494 5.1121 11 1 2.4881 -2.5656 3.7119 12 6 2.0323 -0.7103 -1.2306 13 7 3.1041 -0.3860 -1.8932 14 6 3.2635 -1.2300 -2.9447 15 6 4.2196 -1.3370 -3.9583 16 6 4.1053 -2.3191 -4.9009 17 6 3.0473 -3.2162 -4.8637 18 6 2.0931 -3.1306 -3.8725 19 6 2.1927 -2.1390 -2.9059 20 7 1.4282 -1.7806 -1.8137 21 1 0.6121 -2.2127 -1.5166 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7088 1.1610 3.4844 26 1 5.0469 -0.6438 -3.9968 27 1 4.8461 -2.3982 -5.6828 28 1 2.9714 -3.9874 -5.6161 29 1 1.2719 -3.8315 -3.8479 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261245450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:32 Heat of formation + Delta-G solvation = 55.031445 kcal Electronic energy + Delta-G solvation = -13727.167517 eV Core-core repulsion = 11422.260708 eV Total energy + Delta-G solvation = -2304.906809 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.48932 -37.02815 -34.21806 -32.53749 -30.99603 -29.48391 -28.08445 -25.35157 -23.10812 -21.91829 -21.10803 -19.57121 -17.36811 -16.71041 -16.22401 -15.14582 -14.52637 -14.39040 -13.85272 -13.58310 -12.96280 -12.85505 -11.84846 -11.59580 -11.41305 -11.16355 -11.03088 -10.85465 -10.56459 -10.36445 -10.16022 -10.01092 -9.26500 -9.23468 -8.54130 -7.89997 -7.54057 -6.17363 -4.25859 1.43515 1.93649 3.24098 3.30534 3.32754 3.52009 3.59752 4.29342 4.37949 4.83798 5.12188 5.16968 5.31137 5.55268 5.77506 5.86039 6.09151 6.13110 6.43489 6.53396 6.70353 6.74419 6.81559 6.92311 7.03652 7.31394 7.47292 7.60945 7.83511 8.01505 8.13851 8.71014 8.74598 9.39814 10.88365 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048409 B = 0.007361 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.261132 B = 3802.872239 C = 3924.903102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.107 3.893 3 H 0.067 0.933 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.350 3.650 13 N -0.519 5.519 14 C 0.056 3.944 15 C -0.075 4.075 16 C -0.136 4.136 17 C -0.125 4.125 18 C -0.108 4.108 19 C 0.028 3.972 20 N -0.599 5.599 21 H 0.420 0.580 22 H 0.016 0.984 23 H 0.027 0.973 24 H 0.098 0.902 25 H 0.265 0.735 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -6.120 -9.981 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.087 3.913 3 H 0.085 0.915 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.084 3.916 13 N -0.239 5.239 14 C -0.064 4.064 15 C -0.095 4.095 16 C -0.156 4.156 17 C -0.144 4.144 18 C -0.129 4.129 19 C -0.082 4.082 20 N -0.209 5.209 21 H 0.258 0.742 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.726 -5.309 -9.681 11.064 hybrid contribution -0.616 -1.395 0.814 1.729 sum 0.110 -6.704 -8.867 11.116 Atomic orbital electron populations 1.21871 0.97025 0.99397 1.01643 1.17717 0.92816 0.96225 0.84572 0.91507 1.20862 1.32167 1.12897 0.89286 0.92396 1.24900 0.94709 0.94920 0.99001 1.69851 1.36049 1.22509 1.23988 0.86436 0.78768 0.79925 0.81999 1.20345 1.21035 1.19914 1.24986 0.87451 0.84700 0.94472 1.70608 1.18099 1.27876 1.07298 1.19322 0.95833 0.94586 0.96610 1.19951 0.97692 0.98821 0.93017 1.20485 0.99128 0.96437 0.99575 1.20675 0.95143 1.00087 0.98546 1.19875 1.00717 0.97707 0.94626 1.18975 0.95983 1.00536 0.92751 1.43283 1.24782 1.29111 1.23730 0.74161 0.96522 0.95419 0.88302 0.92518 0.85950 0.86148 0.86105 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.69 37.15 0.32 -2.80 15 2 C 0.11 2.63 2.77 -92.93 -0.26 2.38 15 3 H 0.07 1.80 8.14 -51.93 -0.42 1.38 15 4 C -0.51 -13.70 8.55 -34.44 -0.29 -13.99 15 5 H 0.06 1.59 7.74 -52.48 -0.41 1.18 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 15 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 12 C 0.35 8.02 6.76 -154.82 -1.05 6.98 15 13 N -0.52 -12.31 11.27 -8.23 -0.09 -12.41 15 14 C 0.06 1.16 7.23 -84.70 -0.61 0.55 15 15 C -0.08 -1.28 10.05 -39.61 -0.40 -1.68 15 16 C -0.14 -1.89 9.96 -39.97 -0.40 -2.29 15 17 C -0.12 -1.68 10.03 -39.53 -0.40 -2.07 15 18 C -0.11 -1.64 10.07 -39.50 -0.40 -2.04 15 19 C 0.03 0.53 7.31 -83.99 -0.61 -0.08 15 20 N -0.60 -11.68 5.97 -8.00 -0.05 -11.73 15 21 H 0.42 7.02 8.08 -40.82 -0.33 6.69 15 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.03 0.55 7.36 -51.93 -0.38 0.17 15 24 H 0.10 2.41 6.07 -51.93 -0.32 2.09 15 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 26 H 0.12 1.89 8.06 -52.48 -0.42 1.47 15 27 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 28 H 0.12 1.23 8.06 -52.48 -0.42 0.80 15 29 H 0.12 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 252.21 15.07 3.80 3.80 Total: -1.00 -29.20 252.21 -8.02 -37.22 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.11 Total: 4.12 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -4.19 Total: -13.37 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.49 Total: -47.48 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.20 -8.02 -37.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.252 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds