Wall clock time and date at job start Mon Mar 30 2020 20:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 C 1.50690 * 109.47509 * 120.00529 * 2 1 3 5 5 H 1.08003 * 120.00485 * 119.99771 * 4 2 1 6 6 C 1.37879 * 120.00080 * 300.00369 * 4 2 1 7 7 N 1.31515 * 119.99930 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00410 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47108 * 89.99497 * 8 6 4 10 10 H 1.48498 * 109.47065 * 209.99895 * 8 6 4 11 11 H 1.48499 * 109.46611 * 329.99633 * 8 6 4 12 12 C 1.50710 * 109.47089 * 240.00682 * 2 1 3 13 13 N 1.30110 * 124.95352 * 144.97287 * 12 2 1 14 14 C 1.35776 * 109.64342 * 180.02562 * 13 12 2 15 15 C 1.39742 * 133.60260 * 180.02562 * 14 13 12 16 16 C 1.36602 * 119.88886 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.66869 * 359.96303 * 16 15 14 18 18 C 1.37848 * 120.45154 * 359.97438 * 17 16 15 19 19 C 1.38835 * 119.69325 * 0.02562 * 18 17 16 20 20 N 1.36036 * 124.94652 * 325.25628 * 12 2 1 21 21 H 0.97001 * 126.35413 * 0.07650 * 20 12 2 22 22 H 1.09004 * 109.47512 * 59.99717 * 1 2 3 23 23 H 1.09003 * 109.47146 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47502 * 299.99680 * 1 2 3 25 25 H 0.96995 * 120.00379 * 179.97438 * 7 6 4 26 26 H 1.08008 * 120.05201 * 359.96629 * 15 14 13 27 27 H 1.08000 * 119.66422 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.77052 * 180.02562 * 17 16 15 29 29 H 1.08000 * 120.15985 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4826 7 7 0.9435 0.8299 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5442 4.4117 10 1 1.3445 -0.9494 5.1121 11 1 2.4881 -2.5656 3.7119 12 6 2.0323 -0.7103 -1.2306 13 7 3.1041 -0.3860 -1.8932 14 6 3.2635 -1.2300 -2.9447 15 6 4.2196 -1.3370 -3.9583 16 6 4.1053 -2.3191 -4.9009 17 6 3.0473 -3.2162 -4.8637 18 6 2.0931 -3.1306 -3.8725 19 6 2.1927 -2.1390 -2.9059 20 7 1.4282 -1.7806 -1.8137 21 1 0.6121 -2.2127 -1.5166 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7088 1.1610 3.4844 26 1 5.0469 -0.6438 -3.9968 27 1 4.8461 -2.3982 -5.6828 28 1 2.9714 -3.9874 -5.6161 29 1 1.2719 -3.8315 -3.8479 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261245450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:31 Heat of formation + Delta-G solvation = 37.408648 kcal Electronic energy + Delta-G solvation = -13727.931699 eV Core-core repulsion = 11422.260708 eV Total energy + Delta-G solvation = -2305.670991 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.96424 -38.35126 -36.09423 -34.01762 -32.88856 -30.78516 -29.51336 -27.33893 -24.74964 -23.24824 -22.52964 -21.27467 -18.80558 -18.50307 -17.77261 -16.85383 -16.08673 -15.89987 -15.14661 -14.86873 -14.71847 -14.60864 -13.58219 -13.03248 -12.91056 -12.81379 -12.51634 -12.40235 -12.34381 -12.22501 -11.90901 -11.64683 -11.15757 -10.80988 -10.57053 -9.21784 -8.97568 -8.18964 -6.35564 0.12698 0.67446 1.40482 1.42484 1.51730 1.97004 2.14044 2.41220 3.01544 3.08317 3.43825 3.83784 4.24047 4.35259 4.48341 4.57459 4.63615 4.72656 4.89014 4.92763 5.02939 5.22015 5.41534 5.56501 5.62875 5.67872 5.72493 5.88924 6.07707 6.14042 6.57611 6.67477 7.14065 7.33173 8.85381 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048409 B = 0.007361 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.261132 B = 3802.872239 C = 3924.903102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.110 3.890 3 H 0.028 0.972 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.962 3.038 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.322 3.678 13 N -0.556 5.556 14 C 0.007 3.993 15 C -0.095 4.095 16 C -0.120 4.120 17 C -0.105 4.105 18 C -0.114 4.114 19 C 0.016 3.984 20 N -0.589 5.589 21 H 0.429 0.571 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.268 0.732 26 H 0.127 0.873 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -8.537 -11.811 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.046 0.954 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.787 3.213 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.055 3.945 13 N -0.277 5.277 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.140 4.140 17 C -0.124 4.124 18 C -0.134 4.134 19 C -0.094 4.094 20 N -0.200 5.200 21 H 0.270 0.730 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.180 0.820 28 H 0.186 0.814 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.809 -7.738 -11.528 13.908 hybrid contribution -0.555 -0.700 1.181 1.481 sum 0.254 -8.438 -10.347 13.354 Atomic orbital electron populations 1.21670 0.95313 1.00323 1.01202 1.17447 0.94139 0.94185 0.85248 0.95436 1.21008 1.32397 1.12771 0.90693 0.93884 1.25613 0.94787 0.95558 1.01496 1.69956 1.36541 1.23328 1.24726 0.85505 0.78206 0.78820 0.78813 1.20468 1.19857 1.19628 1.24377 0.88573 0.86625 0.94884 1.70439 1.18777 1.29645 1.08869 1.19821 0.98279 0.95570 0.97408 1.20278 0.97501 1.00419 0.93256 1.21011 0.99726 0.94475 0.98833 1.21313 0.93249 0.99865 0.98009 1.20368 1.02250 0.97050 0.93762 1.19410 0.95392 1.01359 0.93207 1.43075 1.24980 1.28227 1.23757 0.73002 0.94958 0.93705 0.90527 0.92242 0.85530 0.82032 0.81376 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.69 71.98 0.63 -5.14 15 2 C 0.11 5.70 2.77 -12.29 -0.03 5.66 15 3 H 0.03 1.60 8.14 -2.39 -0.02 1.58 15 4 C -0.53 -29.31 8.55 25.60 0.22 -29.09 15 5 H 0.04 2.45 7.74 -2.91 -0.02 2.42 15 6 C 0.03 1.40 5.30 84.66 0.45 1.85 15 7 N -0.91 -50.24 11.32 21.45 0.24 -50.00 15 8 Si 0.96 42.97 29.54 68.60 2.03 44.99 15 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 12 C 0.32 15.39 6.76 137.92 0.93 16.32 15 13 N -0.56 -27.60 11.27 -179.96 -2.03 -29.63 15 14 C 0.01 0.31 7.23 39.45 0.29 0.59 15 15 C -0.09 -3.11 10.05 22.25 0.22 -2.89 15 16 C -0.12 -2.85 9.96 22.02 0.22 -2.63 15 17 C -0.11 -2.27 10.03 22.31 0.22 -2.04 15 18 C -0.11 -3.03 10.07 22.32 0.22 -2.81 15 19 C 0.02 0.60 7.31 38.86 0.28 0.88 15 20 N -0.59 -23.09 5.97 -179.22 -1.07 -24.16 15 21 H 0.43 14.23 8.08 -92.71 -0.75 13.48 15 22 H 0.03 1.31 8.14 -2.38 -0.02 1.29 15 23 H 0.04 1.82 7.36 -2.39 -0.02 1.80 15 24 H 0.08 3.83 6.07 -2.39 -0.01 3.82 15 25 H 0.27 14.00 8.31 -92.71 -0.77 13.23 15 26 H 0.13 3.87 8.06 -2.91 -0.02 3.84 15 27 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 15 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 15 Total: -1.00 -66.22 252.21 3.24 -62.99 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.41 Total: 15.10 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.65 Total: -19.29 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.86 Total: -103.79 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.22 3.24 -62.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.396 kcal (2) G-P(sol) polarization free energy of solvation -66.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds