Wall clock time and date at job start Mon Mar 30 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46923 * 2 1 4 4 C 1.50696 * 109.46934 * 240.00285 * 2 1 3 5 5 H 1.07994 * 120.00594 * 275.01658 * 4 2 1 6 6 C 1.37881 * 119.99966 * 95.02132 * 4 2 1 7 7 N 1.31511 * 120.00324 * 184.91506 * 6 4 2 8 8 Si 1.86799 * 119.99926 * 4.90991 * 6 4 2 9 9 H 1.48504 * 109.46813 * 84.83904 * 8 6 4 10 10 H 1.48503 * 109.47417 * 204.83357 * 8 6 4 11 11 H 1.48498 * 109.47248 * 324.84109 * 8 6 4 12 12 C 1.50696 * 109.47056 * 120.00333 * 2 1 3 13 13 C 1.40469 * 119.85252 * 60.02399 * 12 2 1 14 14 C 1.36029 * 119.69422 * 179.97438 * 13 12 2 15 15 C 1.40935 * 119.32479 * 0.02562 * 14 13 12 16 16 N 1.32565 * 132.32327 * 180.36759 * 15 14 13 17 17 C 1.33513 * 109.15787 * 180.02562 * 16 15 14 18 18 C 1.35113 * 108.62472 * 359.56714 * 17 16 15 19 19 N 1.36838 * 107.17702 * 0.25834 * 18 17 16 20 20 C 1.34959 * 119.84949 * 239.99915 * 12 2 1 21 21 H 1.08995 * 109.47173 * 54.98459 * 1 2 3 22 22 H 1.09006 * 109.46332 * 174.98317 * 1 2 3 23 23 H 1.09002 * 109.46910 * 294.97360 * 1 2 3 24 24 H 0.96993 * 120.00538 * 179.97438 * 7 6 4 25 25 H 1.07991 * 120.15418 * 359.97438 * 13 12 2 26 26 H 1.07995 * 120.33527 * 180.02562 * 14 13 12 27 27 H 1.08001 * 125.69045 * 179.82232 * 17 16 15 28 28 H 1.08001 * 126.40799 * 180.24760 * 18 17 16 29 29 H 1.08004 * 119.69438 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1352 -1.7854 -1.2293 6 6 2.3606 0.0123 -2.3579 7 7 2.7063 -0.6128 -3.4621 8 14 2.3143 1.8793 -2.3170 9 1 3.6000 2.3946 -1.7815 10 1 2.1069 2.3996 -3.6923 11 1 1.1995 2.3278 -1.4446 12 6 2.0324 -0.7105 1.2304 13 6 1.6915 -2.0555 1.4493 14 6 2.1471 -2.6938 2.5607 15 6 2.9558 -1.9920 3.4771 16 7 3.5337 -2.3510 4.6149 17 6 4.2023 -1.3089 5.1146 18 6 4.0582 -0.2607 4.2744 19 7 3.2724 -0.6803 3.2357 20 6 2.8081 -0.0517 2.1168 21 1 -0.3633 0.5896 -0.8416 22 1 -0.3632 -1.0238 -0.0899 23 1 -0.3633 0.4339 0.9316 24 1 2.9369 -0.1045 -4.2554 25 1 1.0707 -2.5804 0.7385 26 1 1.8918 -3.7279 2.7391 27 1 4.7678 -1.3057 6.0347 28 1 4.4834 0.7242 4.3994 29 1 3.0642 0.9823 1.9388 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:42 Heat of formation + Delta-G solvation = 62.326338 kcal Electronic energy + Delta-G solvation = -13851.235857 eV Core-core repulsion = 11546.645378 eV Total energy + Delta-G solvation = -2304.590479 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.62082 -39.03973 -35.72885 -34.45395 -33.54063 -30.00210 -29.59653 -27.19085 -24.66146 -24.07071 -22.59860 -21.43746 -19.30916 -18.18734 -17.51518 -16.83926 -16.67149 -16.03229 -15.39081 -14.94878 -14.70442 -14.48752 -13.97226 -13.72293 -13.41760 -12.88209 -12.70302 -12.49597 -12.29466 -11.83513 -11.75857 -11.59083 -11.13738 -11.07624 -10.70005 -9.53228 -8.69723 -8.26741 -6.31525 -0.06054 0.44429 1.37958 1.40200 1.49771 1.78693 2.02103 2.36666 2.64937 3.10957 3.38161 3.63511 3.89946 4.13654 4.21543 4.44429 4.49511 4.65031 4.71752 4.93135 4.95040 5.07024 5.18557 5.23233 5.47981 5.59248 5.63459 5.75148 5.78766 6.18884 6.31931 6.75337 6.95692 7.33256 8.89529 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.008433 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.388003 B = 3319.381593 C = 3511.619626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 H 0.048 0.952 4 C -0.507 4.507 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.935 3.065 9 H -0.267 1.267 10 H -0.293 1.293 11 H -0.235 1.235 12 C -0.065 4.065 13 C -0.079 4.079 14 C -0.100 4.100 15 C 0.190 3.810 16 N -0.534 5.534 17 C 0.012 3.988 18 C -0.108 4.108 19 N -0.360 5.360 20 C 0.019 3.981 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.265 0.735 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.210 0.790 28 H 0.213 0.787 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 4.419 12.881 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.066 0.934 4 C -0.545 4.545 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.759 3.241 9 H -0.192 1.192 10 H -0.219 1.219 11 H -0.158 1.158 12 C -0.068 4.068 13 C -0.103 4.103 14 C -0.120 4.120 15 C -0.053 4.053 16 N -0.256 5.256 17 C -0.139 4.139 18 C -0.239 4.239 19 N -0.031 5.031 20 C -0.102 4.102 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.161 0.839 26 H 0.180 0.820 27 H 0.226 0.774 28 H 0.230 0.770 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.698 3.733 13.082 13.622 hybrid contribution 0.341 1.209 -1.041 1.632 sum -0.357 4.943 12.041 13.021 Atomic orbital electron populations 1.21903 0.95701 1.01320 1.00037 1.18153 0.94324 0.95256 0.89084 0.93355 1.21117 1.43166 0.94201 0.96031 0.94210 1.25904 0.94265 1.03478 0.94738 1.70040 1.48031 1.38040 1.02703 0.85918 0.80289 0.80177 0.77727 1.19211 1.21924 1.15814 1.19942 0.96495 0.94989 0.95329 1.21120 0.98951 0.94126 0.96112 1.20419 0.97859 1.01145 0.92598 1.21233 1.03632 0.83679 0.96779 1.70672 1.15974 1.30498 1.08434 1.23055 1.01145 0.88123 1.01595 1.23296 1.05649 1.04277 0.90654 1.42989 1.32353 1.11679 1.16034 1.21665 1.01421 1.00137 0.87024 0.93655 0.93096 0.92825 0.92572 0.83941 0.81974 0.77358 0.76994 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 8.92 71.98 0.64 -4.13 15 2 C 0.05 2.11 2.13 -12.29 -0.03 2.08 15 3 H 0.05 1.90 4.97 -2.39 -0.01 1.89 15 4 C -0.51 -26.37 8.64 25.60 0.22 -26.15 15 5 H 0.04 2.32 7.66 -2.91 -0.02 2.30 15 6 C 0.01 0.73 5.47 84.66 0.46 1.19 15 7 N -0.95 -56.66 13.96 21.45 0.30 -56.36 15 8 Si 0.94 40.39 26.99 68.60 1.85 42.24 15 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.24 -9.02 6.82 99.48 0.68 -8.34 15 12 C -0.06 -2.42 4.73 -20.08 -0.09 -2.51 15 13 C -0.08 -2.83 8.67 22.30 0.19 -2.64 15 14 C -0.10 -3.40 10.11 22.42 0.23 -3.17 15 15 C 0.19 6.83 7.81 134.11 1.05 7.88 15 16 N -0.53 -18.80 11.32 -194.34 -2.20 -21.00 15 17 C 0.01 0.34 11.83 83.72 0.99 1.33 15 18 C -0.11 -2.86 11.76 83.19 0.98 -1.89 15 19 N -0.36 -11.95 2.94 -352.14 -1.04 -12.98 15 20 C 0.02 0.62 10.56 83.22 0.88 1.50 15 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.05 1.82 7.59 -2.38 -0.02 1.80 15 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 25 H 0.14 4.97 7.62 -2.92 -0.02 4.94 15 26 H 0.16 4.65 8.06 -2.91 -0.02 4.63 15 27 H 0.21 3.91 8.06 -2.91 -0.02 3.89 15 28 H 0.21 3.77 8.06 -2.91 -0.02 3.74 15 29 H 0.18 4.95 7.87 -2.91 -0.02 4.93 15 Total: -1.00 -65.50 251.34 5.55 -59.95 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.12 Total: 14.66 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 5.52 Total: -26.51 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.94 Total: -90.34 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.85 Total: 42.24 kcal Total: -65.50 5.55 -59.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.273 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds