Wall clock time and date at job start Mon Mar 30 2020 20:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36640 * 125.09521 * 2 1 4 4 C 1.34357 * 109.94039 * 180.20537 * 3 2 1 5 5 C 1.50697 * 126.45446 * 179.86511 * 4 3 2 6 6 C 1.50700 * 109.47266 * 264.68524 * 5 4 3 7 7 H 1.07999 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99792 * 359.72305 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47088 * 89.99795 * 10 8 6 12 12 H 1.48495 * 109.47293 * 209.99997 * 10 8 6 13 13 H 1.48507 * 109.47015 * 329.99955 * 10 8 6 14 14 C 1.46421 * 107.08251 * 359.60154 * 4 3 2 15 15 N 1.32995 * 133.75592 * 180.26172 * 14 4 3 16 16 C 1.31536 * 121.40317 * 179.97438 * 15 14 4 17 17 C 1.38675 * 121.27303 * 0.02562 * 16 15 14 18 18 C 1.38304 * 119.67678 * 359.97438 * 17 16 15 19 19 C 1.37628 * 125.09332 * 179.76412 * 2 1 3 20 20 H 1.08998 * 109.47497 * 270.23566 * 1 2 3 21 21 H 1.09004 * 109.47095 * 30.23611 * 1 2 3 22 22 H 1.09005 * 109.47203 * 150.23163 * 1 2 3 23 23 H 1.07997 * 125.02362 * 0.08232 * 3 2 1 24 24 H 1.09004 * 109.47205 * 144.68617 * 5 4 3 25 25 H 1.08997 * 109.47395 * 24.69109 * 5 4 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.35977 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.15931 * 180.02562 * 17 16 15 29 29 H 1.07996 * 120.85447 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1180 0.0000 4 6 3.5474 0.7667 -0.0045 5 6 4.7286 1.7026 -0.0089 6 6 5.1990 1.9111 -1.4253 7 1 4.6930 1.4159 -2.2408 8 6 6.2755 2.7343 -1.6801 9 7 6.8882 3.3417 -0.6875 10 14 6.8582 2.9933 -3.4359 11 1 6.1468 4.1550 -4.0272 12 1 8.3200 3.2541 -3.4389 13 1 6.5707 1.7766 -4.2374 14 6 3.5967 -0.6966 0.0020 15 7 4.5877 -1.5835 0.0059 16 6 4.3497 -2.8772 0.0122 17 6 3.0538 -3.3707 0.0147 18 6 1.9862 -2.4915 0.0110 19 6 2.2562 -1.1261 0.0046 20 1 -0.3634 0.0042 1.0276 21 1 -0.3633 0.8879 -0.5175 22 1 -0.3634 -0.8921 -0.5103 23 1 1.8833 2.1336 0.0013 24 1 5.5363 1.2711 0.5824 25 1 4.4351 2.6602 0.4212 26 1 7.6457 3.9204 -0.8668 27 1 5.1797 -3.5682 0.0156 28 1 2.8791 -4.4365 0.0204 29 1 0.9693 -2.8550 0.0132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:03 Heat of formation + Delta-G solvation = 67.575846 kcal Electronic energy + Delta-G solvation = -13692.455775 eV Core-core repulsion = 11388.092932 eV Total energy + Delta-G solvation = -2304.362843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00039 -37.45841 -33.82081 -32.27788 -31.07565 -29.38393 -27.95777 -25.36138 -23.00931 -22.73924 -21.43662 -18.84698 -16.58517 -16.38583 -16.10525 -15.51701 -15.07211 -14.35275 -13.99047 -13.19995 -13.15637 -12.51608 -12.37137 -12.20123 -12.05305 -11.73364 -11.22968 -10.96850 -10.60662 -10.32809 -9.87404 -9.59377 -9.16717 -8.65945 -8.26029 -7.82650 -7.08814 -5.87654 -3.89485 1.48845 1.89221 3.16159 3.30348 3.39495 3.45611 3.51919 4.49810 4.61350 4.86921 4.88985 5.01120 5.21583 5.26446 5.39545 5.45616 5.47277 5.68183 5.91947 5.95272 6.42334 6.49887 6.58846 7.10850 7.19379 7.51087 7.67599 7.80934 8.00431 8.08611 8.52118 8.73351 9.13914 9.72299 11.21889 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.008644 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.781016 B = 3238.421386 C = 3680.718206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.491 5.491 3 C 0.024 3.976 4 C -0.092 4.092 5 C 0.082 3.918 6 C -0.499 4.499 7 H 0.053 0.947 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.101 3.899 15 N -0.427 5.427 16 C 0.070 3.930 17 C -0.165 4.165 18 C -0.098 4.098 19 C 0.044 3.956 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.170 0.830 24 H 0.034 0.966 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -9.238 1.936 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.177 5.177 3 C -0.099 4.099 4 C -0.098 4.098 5 C 0.045 3.955 6 C -0.537 4.537 7 H 0.071 0.929 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.033 4.033 15 N -0.134 5.134 16 C -0.098 4.098 17 C -0.186 4.186 18 C -0.127 4.127 19 C -0.065 4.065 20 H 0.081 0.919 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.187 0.813 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.167 0.833 28 H 0.147 0.853 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.971 -8.684 1.967 14.920 hybrid contribution -0.653 -0.224 -1.030 1.240 sum -12.624 -8.908 0.936 15.479 Atomic orbital electron populations 1.21808 0.77976 1.03615 1.02265 1.43515 1.05211 1.04244 1.64734 1.21657 0.89728 0.90608 1.07940 1.21200 0.95342 0.90304 1.02997 1.17734 0.88885 0.91380 0.97509 1.21056 1.13775 1.26744 0.92156 0.92917 1.24970 0.96484 0.95989 0.96929 1.69959 1.22090 1.30949 1.30721 0.86583 0.77838 0.78324 0.85213 1.20819 1.21227 1.19983 1.20192 0.86544 0.94384 1.02227 1.67136 1.35568 1.01848 1.08832 1.22520 0.95548 0.91493 1.00205 1.21700 0.93487 0.99665 1.03783 1.20268 0.99313 0.89359 1.03761 1.19140 0.92527 0.88872 1.05953 0.91913 0.90091 0.90872 0.81276 0.94788 0.95538 0.93065 0.83307 0.85290 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.03 59.85 0.66 1.58 15 2 N -0.49 -8.16 3.17 -121.80 -0.39 -8.55 15 3 C 0.02 0.45 11.20 -16.78 -0.19 0.26 15 4 C -0.09 -2.16 5.50 -102.70 -0.57 -2.72 15 5 C 0.08 2.26 5.50 -29.04 -0.16 2.10 15 6 C -0.50 -14.75 9.09 -34.44 -0.31 -15.07 15 7 H 0.05 1.57 7.74 -52.49 -0.41 1.17 15 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 9 N -0.90 -27.50 13.29 55.43 0.74 -26.77 15 10 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 15 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 13 H -0.27 -6.91 7.11 56.52 0.40 -6.51 15 14 C 0.10 2.28 7.49 -83.12 -0.62 1.66 15 15 N -0.43 -9.57 10.42 -9.86 -0.10 -9.67 15 16 C 0.07 1.20 11.16 -17.52 -0.20 1.01 15 17 C -0.17 -2.38 10.09 -39.40 -0.40 -2.78 15 18 C -0.10 -1.48 10.10 -39.20 -0.40 -1.87 15 19 C 0.04 0.82 6.82 -83.96 -0.57 0.25 15 20 H 0.06 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.67 8.12 -51.93 -0.42 0.25 15 23 H 0.17 2.74 8.06 -52.49 -0.42 2.32 15 24 H 0.03 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 27 H 0.15 2.07 8.06 -52.49 -0.42 1.65 15 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 15 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -34.51 260.14 -7.04 -41.56 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.34 Total: -3.96 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -2.85 Total: -14.01 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.25 Total: -44.99 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.51 -7.04 -41.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.131 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds