Wall clock time and date at job start Mon Mar 30 2020 20:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36640 * 125.09521 * 2 1 4 4 C 1.34357 * 109.94039 * 180.20537 * 3 2 1 5 5 C 1.50697 * 126.45446 * 179.86511 * 4 3 2 6 6 C 1.50700 * 109.47266 * 264.68524 * 5 4 3 7 7 H 1.07999 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99792 * 359.72305 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47088 * 89.99795 * 10 8 6 12 12 H 1.48495 * 109.47293 * 209.99997 * 10 8 6 13 13 H 1.48507 * 109.47015 * 329.99955 * 10 8 6 14 14 C 1.46421 * 107.08251 * 359.60154 * 4 3 2 15 15 N 1.32995 * 133.75592 * 180.26172 * 14 4 3 16 16 C 1.31536 * 121.40317 * 179.97438 * 15 14 4 17 17 C 1.38675 * 121.27303 * 0.02562 * 16 15 14 18 18 C 1.38304 * 119.67678 * 359.97438 * 17 16 15 19 19 C 1.37628 * 125.09332 * 179.76412 * 2 1 3 20 20 H 1.08998 * 109.47497 * 270.23566 * 1 2 3 21 21 H 1.09004 * 109.47095 * 30.23611 * 1 2 3 22 22 H 1.09005 * 109.47203 * 150.23163 * 1 2 3 23 23 H 1.07997 * 125.02362 * 0.08232 * 3 2 1 24 24 H 1.09004 * 109.47205 * 144.68617 * 5 4 3 25 25 H 1.08997 * 109.47395 * 24.69109 * 5 4 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.35977 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.15931 * 180.02562 * 17 16 15 29 29 H 1.07996 * 120.85447 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1180 0.0000 4 6 3.5474 0.7667 -0.0045 5 6 4.7286 1.7026 -0.0089 6 6 5.1990 1.9111 -1.4253 7 1 4.6930 1.4159 -2.2408 8 6 6.2755 2.7343 -1.6801 9 7 6.8882 3.3417 -0.6875 10 14 6.8582 2.9933 -3.4359 11 1 6.1468 4.1550 -4.0272 12 1 8.3200 3.2541 -3.4389 13 1 6.5707 1.7766 -4.2374 14 6 3.5967 -0.6966 0.0020 15 7 4.5877 -1.5835 0.0059 16 6 4.3497 -2.8772 0.0122 17 6 3.0538 -3.3707 0.0147 18 6 1.9862 -2.4915 0.0110 19 6 2.2562 -1.1261 0.0046 20 1 -0.3634 0.0042 1.0276 21 1 -0.3633 0.8879 -0.5175 22 1 -0.3634 -0.8921 -0.5103 23 1 1.8833 2.1336 0.0013 24 1 5.5363 1.2711 0.5824 25 1 4.4351 2.6602 0.4212 26 1 7.6457 3.9204 -0.8668 27 1 5.1797 -3.5682 0.0156 28 1 2.8791 -4.4365 0.0204 29 1 0.9693 -2.8550 0.0132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:02 Heat of formation + Delta-G solvation = 44.488246 kcal Electronic energy + Delta-G solvation = -13693.456929 eV Core-core repulsion = 11388.092932 eV Total energy + Delta-G solvation = -2305.363997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.36101 -38.79013 -35.69590 -34.04889 -32.41294 -30.95520 -29.51591 -26.89310 -24.76909 -24.23658 -22.79533 -20.33140 -18.48526 -17.88941 -17.65699 -16.83812 -16.37977 -16.29364 -15.24043 -14.46453 -14.37640 -14.21993 -14.11104 -13.76966 -13.38339 -13.16559 -12.88575 -12.62547 -12.42638 -12.29276 -11.73401 -11.60228 -10.91177 -10.56211 -10.03358 -9.18118 -8.63352 -8.10005 -6.26160 0.19585 0.57469 1.36784 1.40338 1.51144 1.81849 1.95294 2.44162 3.13123 3.15063 3.57067 3.80544 3.96420 4.13570 4.17618 4.43607 4.52119 4.66458 4.73378 4.80831 4.95576 5.02433 5.25788 5.36098 5.61547 5.66420 5.78866 5.88012 6.23683 6.29059 6.48393 6.84292 7.36782 7.41364 8.95128 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.008644 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.781016 B = 3238.421386 C = 3680.718206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.482 5.482 3 C 0.053 3.947 4 C -0.163 4.163 5 C 0.099 3.901 6 C -0.517 4.517 7 H 0.042 0.958 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.051 3.949 15 N -0.495 5.495 16 C 0.062 3.938 17 C -0.151 4.151 18 C -0.084 4.084 19 C 0.034 3.966 20 H 0.084 0.916 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.194 0.806 24 H -0.014 1.014 25 H 0.009 0.991 26 H 0.264 0.736 27 H 0.173 0.827 28 H 0.181 0.819 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 -11.135 0.851 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.165 5.165 3 C -0.074 4.074 4 C -0.170 4.170 5 C 0.062 3.938 6 C -0.555 4.555 7 H 0.061 0.939 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.199 1.199 14 C -0.082 4.082 15 N -0.203 5.203 16 C -0.105 4.105 17 C -0.172 4.172 18 C -0.113 4.113 19 C -0.076 4.076 20 H 0.102 0.898 21 H 0.118 0.882 22 H 0.116 0.884 23 H 0.211 0.789 24 H 0.004 0.996 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.190 0.810 28 H 0.199 0.801 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.832 -10.588 0.888 18.245 hybrid contribution 0.155 0.233 -0.626 0.686 sum -14.677 -10.355 0.262 17.964 Atomic orbital electron populations 1.22270 0.73912 1.05865 1.04363 1.43812 1.07302 1.02761 1.62657 1.21826 0.88793 0.92353 1.04386 1.20894 0.95762 0.91222 1.09139 1.17278 0.89623 0.91284 0.95638 1.21324 1.14345 1.26849 0.92968 0.93926 1.25913 0.96406 0.95446 1.01750 1.70091 1.22572 1.31498 1.33161 0.85453 0.77640 0.78579 0.79371 1.18933 1.20337 1.19937 1.20288 0.88958 0.93969 1.04944 1.67022 1.37404 1.04084 1.11824 1.23159 0.98295 0.90274 0.98768 1.22225 0.91792 1.02165 1.01010 1.20868 1.01871 0.87506 1.01071 1.19380 0.91056 0.90738 1.06411 0.89783 0.88216 0.88411 0.78895 0.99616 0.97298 0.92678 0.80959 0.80126 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 11.03 127.77 1.41 2.69 15 2 N -0.48 -14.96 3.17 -539.25 -1.71 -16.67 15 3 C 0.05 2.01 11.20 83.06 0.93 2.94 15 4 C -0.16 -8.12 5.50 -18.62 -0.10 -8.22 15 5 C 0.10 5.91 5.50 29.10 0.16 6.07 15 6 C -0.52 -32.31 9.09 25.60 0.23 -32.08 15 7 H 0.04 2.67 7.74 -2.91 -0.02 2.65 15 8 C 0.00 0.13 5.46 84.66 0.46 0.59 15 9 N -0.93 -59.64 13.29 21.45 0.28 -59.35 15 10 Si 0.97 47.32 29.54 68.60 2.03 49.35 15 11 H -0.26 -12.15 7.11 99.48 0.71 -11.45 15 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 15 13 H -0.27 -13.32 7.11 99.48 0.71 -12.61 15 14 C 0.05 2.37 7.49 41.72 0.31 2.69 15 15 N -0.49 -23.15 10.42 -185.11 -1.93 -25.08 15 16 C 0.06 2.10 11.16 84.84 0.95 3.05 15 17 C -0.15 -3.76 10.09 22.39 0.23 -3.54 15 18 C -0.08 -2.19 10.10 22.51 0.23 -1.97 15 19 C 0.03 1.20 6.82 39.08 0.27 1.47 15 20 H 0.08 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.10 1.37 8.14 -2.38 -0.02 1.35 15 22 H 0.10 1.23 8.12 -2.38 -0.02 1.22 15 23 H 0.19 6.15 8.06 -2.91 -0.02 6.13 15 24 H -0.01 -0.97 8.14 -2.38 -0.02 -0.99 15 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 15 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 15 27 H 0.17 4.61 8.06 -2.91 -0.02 4.58 15 28 H 0.18 2.61 8.06 -2.91 -0.02 2.59 15 29 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -82.62 260.14 4.88 -77.74 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.14 Total: 0.31 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 5.07 Total: -26.30 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.35 Total: -101.11 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.62 4.88 -77.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.232 kcal (2) G-P(sol) polarization free energy of solvation -82.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds