Wall clock time and date at job start Mon Mar 30 2020 20:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47301 * 2 1 4 4 C 1.50705 * 109.47256 * 240.00642 * 2 1 3 5 5 H 1.07996 * 119.99704 * 245.46451 * 4 2 1 6 6 C 1.37872 * 120.00276 * 65.46062 * 4 2 1 7 7 N 1.31518 * 119.99981 * 9.59616 * 6 4 2 8 8 Si 1.86798 * 120.00077 * 189.59933 * 6 4 2 9 9 H 1.48497 * 109.47133 * 84.99396 * 8 6 4 10 10 H 1.48507 * 109.47025 * 204.99543 * 8 6 4 11 11 H 1.48499 * 109.47286 * 324.99366 * 8 6 4 12 12 C 1.50693 * 109.47313 * 120.00371 * 2 1 3 13 13 C 1.38777 * 119.77513 * 59.99879 * 12 2 1 14 14 C 1.36607 * 120.66830 * 179.97438 * 13 12 2 15 15 C 1.39733 * 119.88787 * 0.02841 * 14 13 12 16 16 N 1.35791 * 133.60097 * 180.02562 * 15 14 13 17 17 C 1.30109 * 109.63889 * 179.75591 * 16 15 14 18 18 N 1.36039 * 110.10452 * 0.38757 * 17 16 15 19 19 H 0.96995 * 126.35146 * 179.87028 * 18 17 16 20 20 C 1.38052 * 107.29958 * 359.61648 * 18 17 16 21 21 C 1.37859 * 119.77673 * 240.02413 * 12 2 1 22 22 H 1.09001 * 109.47200 * 183.24894 * 1 2 3 23 23 H 1.08999 * 109.47530 * 303.25171 * 1 2 3 24 24 H 1.09005 * 109.47190 * 63.25170 * 1 2 3 25 25 H 0.97001 * 120.00366 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.66215 * 0.02562 * 13 12 2 27 27 H 1.07999 * 120.05309 * 180.02562 * 14 13 12 28 28 H 1.08002 * 124.94607 * 180.25293 * 17 16 15 29 29 H 1.08002 * 120.15400 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7947 -0.1772 -2.4796 7 7 1.3000 1.0361 -2.5935 8 14 2.1750 -1.1782 -4.0102 9 1 1.0224 -2.0604 -4.3238 10 1 2.4221 -0.2616 -5.1523 11 1 3.3830 -2.0081 -3.7714 12 6 2.0323 -0.7104 1.2303 13 6 1.6942 -2.0391 1.4453 14 6 2.1399 -2.7010 2.5540 15 6 2.9442 -2.0377 3.4845 16 7 3.5284 -2.4111 4.6521 17 6 4.1927 -1.4088 5.1489 18 7 4.0737 -0.3218 4.3395 19 1 4.4718 0.5505 4.4861 20 6 3.2861 -0.6922 3.2679 21 6 2.8242 -0.0359 2.1350 22 1 -0.3634 -1.0260 0.0582 23 1 -0.3634 0.5635 0.8594 24 1 -0.3634 0.4625 -0.9177 25 1 1.1331 1.4114 -3.4723 26 1 1.0731 -2.5553 0.7282 27 1 1.8711 -3.7351 2.7112 28 1 4.7548 -1.4351 6.0707 29 1 3.0838 0.9983 1.9635 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:05 Heat of formation + Delta-G solvation = 57.054624 kcal Electronic energy + Delta-G solvation = -13721.265786 eV Core-core repulsion = 11416.446708 eV Total energy + Delta-G solvation = -2304.819078 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60182 -37.37533 -33.83196 -32.66157 -30.93689 -29.40791 -27.54605 -25.09794 -22.72704 -22.35140 -21.01559 -19.81317 -17.62174 -16.51724 -15.74670 -15.20727 -14.76464 -14.39398 -13.65802 -13.32465 -13.18371 -12.60484 -11.82139 -11.63655 -11.35843 -11.08451 -10.87131 -10.65659 -10.40504 -10.24676 -10.08933 -9.71549 -9.36929 -9.03309 -8.36836 -7.81079 -7.39649 -6.05583 -4.07784 1.56197 2.14790 3.24885 3.27296 3.30836 3.37257 3.41160 4.39740 4.55331 4.62419 5.07977 5.27897 5.64683 5.78186 5.84415 6.00810 6.12094 6.42052 6.64050 6.77728 6.87574 6.98275 7.11416 7.15716 7.30379 7.54151 7.67241 7.68431 7.92844 7.95609 8.22866 8.36103 8.94865 9.55553 11.02999 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.007376 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.807483 B = 3795.008005 C = 3896.262328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.070 3.930 3 H 0.042 0.958 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.004 4.004 13 C -0.110 4.110 14 C -0.076 4.076 15 C 0.018 3.982 16 N -0.497 5.497 17 C 0.234 3.766 18 N -0.608 5.608 19 H 0.418 0.582 20 C 0.053 3.947 21 C -0.137 4.137 22 H 0.032 0.968 23 H 0.014 0.986 24 H 0.068 0.932 25 H 0.261 0.739 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.207 0.793 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -1.392 10.923 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.006 4.006 13 C -0.130 4.130 14 C -0.095 4.095 15 C -0.099 4.099 16 N -0.218 5.218 17 C -0.053 4.053 18 N -0.220 5.220 19 H 0.256 0.744 20 C -0.055 4.055 21 C -0.158 4.158 22 H 0.052 0.948 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.137 0.863 28 H 0.224 0.776 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.181 -2.140 11.113 11.756 hybrid contribution 0.615 0.791 -1.057 1.456 sum 3.796 -1.349 10.056 10.833 Atomic orbital electron populations 1.21736 0.97839 0.98955 0.99923 1.17913 0.92480 0.96012 0.88397 0.93993 1.21068 1.35781 1.08115 0.89835 0.92262 1.24941 0.95199 0.94623 0.98944 1.69964 1.44962 1.13913 1.23816 0.86643 0.78843 0.80161 0.82620 1.20470 1.21370 1.19902 1.20471 0.91880 0.93534 0.94726 1.20701 1.00883 0.94819 0.96583 1.19970 0.97258 0.99299 0.92999 1.18928 1.03821 0.91953 0.95191 1.70307 1.13248 1.28492 1.09727 1.25071 1.00549 0.82155 0.97546 1.43067 1.44632 1.14175 1.20165 0.74422 1.18979 0.98442 0.96427 0.91689 1.19911 1.03069 0.99965 0.92864 0.94844 0.96724 0.91325 0.92912 0.85170 0.86275 0.77611 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.93 37.16 0.33 -2.59 15 2 C 0.07 1.71 2.33 -92.93 -0.22 1.50 15 3 H 0.04 1.10 7.80 -51.93 -0.41 0.70 15 4 C -0.51 -13.60 8.18 -34.44 -0.28 -13.89 15 5 H 0.06 1.59 7.55 -52.49 -0.40 1.19 15 6 C 0.06 1.75 5.17 -17.82 -0.09 1.66 15 7 N -0.89 -24.93 12.16 55.43 0.67 -24.25 15 8 Si 0.89 20.96 29.55 -169.99 -5.02 15.94 15 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.00 -0.09 4.75 -104.56 -0.50 -0.59 15 13 C -0.11 -2.20 8.53 -39.97 -0.34 -2.54 15 14 C -0.08 -1.42 10.05 -39.61 -0.40 -1.82 15 15 C 0.02 0.33 7.23 -84.70 -0.61 -0.28 15 16 N -0.50 -8.61 11.27 -12.05 -0.14 -8.75 15 17 C 0.23 3.02 12.97 -89.78 -1.16 1.86 15 18 N -0.61 -8.09 6.23 -11.76 -0.07 -8.16 15 19 H 0.42 3.93 8.96 -40.82 -0.37 3.56 15 20 C 0.05 0.96 7.30 -83.99 -0.61 0.34 15 21 C -0.14 -2.67 9.69 -39.50 -0.38 -3.05 15 22 H 0.03 0.72 7.26 -51.93 -0.38 0.34 15 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 24 H 0.07 1.72 6.84 -51.93 -0.36 1.37 15 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 26 H 0.13 2.53 7.52 -52.49 -0.39 2.14 15 27 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 28 H 0.21 1.53 8.06 -52.49 -0.42 1.11 15 29 H 0.12 2.12 7.93 -52.49 -0.42 1.70 15 LS Contribution 252.10 15.07 3.80 3.80 Total: -1.00 -30.96 252.10 -8.14 -39.10 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.11 Total: 1.71 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -4.27 Total: -19.39 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.47 Total: -41.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.96 -8.14 -39.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.151 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds