Wall clock time and date at job start Mon Mar 30 2020 20:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47301 * 2 1 4 4 C 1.50705 * 109.47256 * 240.00642 * 2 1 3 5 5 H 1.07996 * 119.99704 * 245.46451 * 4 2 1 6 6 C 1.37872 * 120.00276 * 65.46062 * 4 2 1 7 7 N 1.31518 * 119.99981 * 9.59616 * 6 4 2 8 8 Si 1.86798 * 120.00077 * 189.59933 * 6 4 2 9 9 H 1.48497 * 109.47133 * 84.99396 * 8 6 4 10 10 H 1.48507 * 109.47025 * 204.99543 * 8 6 4 11 11 H 1.48499 * 109.47286 * 324.99366 * 8 6 4 12 12 C 1.50693 * 109.47313 * 120.00371 * 2 1 3 13 13 C 1.38777 * 119.77513 * 59.99879 * 12 2 1 14 14 C 1.36607 * 120.66830 * 179.97438 * 13 12 2 15 15 C 1.39733 * 119.88787 * 0.02841 * 14 13 12 16 16 N 1.35791 * 133.60097 * 180.02562 * 15 14 13 17 17 C 1.30109 * 109.63889 * 179.75591 * 16 15 14 18 18 N 1.36039 * 110.10452 * 0.38757 * 17 16 15 19 19 H 0.96995 * 126.35146 * 179.87028 * 18 17 16 20 20 C 1.38052 * 107.29958 * 359.61648 * 18 17 16 21 21 C 1.37859 * 119.77673 * 240.02413 * 12 2 1 22 22 H 1.09001 * 109.47200 * 183.24894 * 1 2 3 23 23 H 1.08999 * 109.47530 * 303.25171 * 1 2 3 24 24 H 1.09005 * 109.47190 * 63.25170 * 1 2 3 25 25 H 0.97001 * 120.00366 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.66215 * 0.02562 * 13 12 2 27 27 H 1.07999 * 120.05309 * 180.02562 * 14 13 12 28 28 H 1.08002 * 124.94607 * 180.25293 * 17 16 15 29 29 H 1.08002 * 120.15400 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7947 -0.1772 -2.4796 7 7 1.3000 1.0361 -2.5935 8 14 2.1750 -1.1782 -4.0102 9 1 1.0224 -2.0604 -4.3238 10 1 2.4221 -0.2616 -5.1523 11 1 3.3830 -2.0081 -3.7714 12 6 2.0323 -0.7104 1.2303 13 6 1.6942 -2.0391 1.4453 14 6 2.1399 -2.7010 2.5540 15 6 2.9442 -2.0377 3.4845 16 7 3.5284 -2.4111 4.6521 17 6 4.1927 -1.4088 5.1489 18 7 4.0737 -0.3218 4.3395 19 1 4.4718 0.5505 4.4861 20 6 3.2861 -0.6922 3.2679 21 6 2.8242 -0.0359 2.1350 22 1 -0.3634 -1.0260 0.0582 23 1 -0.3634 0.5635 0.8594 24 1 -0.3634 0.4625 -0.9177 25 1 1.1331 1.4114 -3.4723 26 1 1.0731 -2.5553 0.7282 27 1 1.8711 -3.7351 2.7112 28 1 4.7548 -1.4351 6.0707 29 1 3.0838 0.9983 1.9635 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:04 Heat of formation + Delta-G solvation = 38.914049 kcal Electronic energy + Delta-G solvation = -13722.052420 eV Core-core repulsion = 11416.446708 eV Total energy + Delta-G solvation = -2305.605712 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.87257 -38.90667 -35.65157 -34.00021 -32.77462 -30.81612 -29.06899 -27.13471 -24.24091 -23.80998 -22.27117 -21.46565 -18.97655 -18.19724 -17.43603 -16.82980 -16.11159 -16.02476 -15.13558 -14.75080 -14.57915 -14.44741 -13.60394 -13.35041 -13.18491 -12.75214 -12.54876 -12.37594 -12.17352 -12.00162 -11.56280 -11.35890 -10.98146 -10.86468 -10.43407 -9.20450 -8.86368 -8.10989 -6.19855 0.19204 0.68990 1.43432 1.45021 1.53724 2.01007 2.16125 2.45944 3.04000 3.19867 3.49597 3.87509 4.26703 4.44405 4.49058 4.56925 4.69992 4.84149 4.91939 5.16380 5.18509 5.29055 5.51618 5.56442 5.61117 5.71985 5.94793 6.06135 6.12719 6.37941 6.64206 6.88466 7.01423 7.46430 8.96408 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.007376 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.807483 B = 3795.008005 C = 3896.262328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.073 3.927 3 H 0.012 0.988 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.035 4.035 13 C -0.118 4.118 14 C -0.079 4.079 15 C 0.004 3.996 16 N -0.538 5.538 17 C 0.269 3.731 18 N -0.593 5.593 19 H 0.438 0.562 20 C 0.041 3.959 21 C -0.136 4.136 22 H 0.042 0.958 23 H 0.029 0.971 24 H 0.042 0.958 25 H 0.262 0.738 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.267 0.733 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -2.035 12.741 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.055 3.945 3 H 0.030 0.970 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.196 1.196 12 C -0.037 4.037 13 C -0.138 4.138 14 C -0.099 4.099 15 C -0.112 4.112 16 N -0.259 5.259 17 C -0.018 4.018 18 N -0.207 5.207 19 H 0.280 0.720 20 C -0.069 4.069 21 C -0.157 4.157 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.154 0.846 28 H 0.283 0.717 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.442 -2.759 12.943 13.960 hybrid contribution 0.333 1.014 -1.419 1.776 sum 4.775 -1.745 11.524 12.596 Atomic orbital electron populations 1.21588 0.97261 0.99436 0.99171 1.17733 0.93021 0.94376 0.89401 0.97030 1.21344 1.35515 1.07919 0.91136 0.92933 1.25658 0.95264 0.95465 1.01678 1.70072 1.46064 1.15178 1.24362 0.85703 0.78765 0.78793 0.79230 1.19767 1.21092 1.19629 1.20207 0.94371 0.94396 0.94710 1.20616 1.01562 0.94358 0.97310 1.20120 0.97090 1.00082 0.92573 1.19238 1.03639 0.92440 0.95886 1.70352 1.15436 1.30481 1.09659 1.26290 0.97449 0.80343 0.97676 1.43098 1.43422 1.15526 1.18623 0.71991 1.18901 0.99374 0.96246 0.92408 1.19910 1.02442 1.00133 0.93203 0.93936 0.95172 0.93911 0.92916 0.85537 0.84554 0.71705 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.93 71.98 0.64 -4.88 15 2 C 0.07 3.68 2.33 -12.29 -0.03 3.65 15 3 H 0.01 0.64 7.80 -2.38 -0.02 0.62 15 4 C -0.52 -28.47 8.18 25.60 0.21 -28.26 15 5 H 0.05 2.87 7.55 -2.91 -0.02 2.85 15 6 C 0.02 1.01 5.17 84.65 0.44 1.45 15 7 N -0.92 -52.71 12.16 21.45 0.26 -52.45 15 8 Si 0.95 43.45 29.55 68.60 2.03 45.48 15 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 15 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 12 C -0.04 -1.54 4.75 -19.83 -0.09 -1.63 15 13 C -0.12 -4.78 8.53 22.02 0.19 -4.59 15 14 C -0.08 -2.92 10.05 22.25 0.22 -2.69 15 15 C 0.00 0.16 7.23 39.45 0.29 0.45 15 16 N -0.54 -16.97 11.27 -192.03 -2.17 -19.13 15 17 C 0.27 5.69 12.97 180.06 2.33 8.02 15 18 N -0.59 -13.59 6.23 -191.13 -1.19 -14.78 15 19 H 0.44 6.47 8.96 -92.71 -0.83 5.64 15 20 C 0.04 1.40 7.30 38.86 0.28 1.68 15 21 C -0.14 -5.28 9.69 22.32 0.22 -5.06 15 22 H 0.04 1.87 7.26 -2.39 -0.02 1.85 15 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.04 2.20 6.84 -2.38 -0.02 2.19 15 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15 26 H 0.13 5.04 7.52 -2.91 -0.02 5.01 15 27 H 0.14 4.39 8.06 -2.91 -0.02 4.37 15 28 H 0.27 2.10 8.06 -2.91 -0.02 2.07 15 29 H 0.12 4.43 7.93 -2.91 -0.02 4.40 15 Total: -1.00 -67.95 252.10 3.96 -63.99 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.33 Total: 8.78 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 4.70 Total: -31.88 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.10 Total: -86.37 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.95 3.96 -63.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.903 kcal (2) G-P(sol) polarization free energy of solvation -67.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds