Wall clock time and date at job start Mon Mar 30 2020 20:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 60.00398 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00019 * 8 6 4 12 12 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 13 13 C 1.38781 * 119.77335 * 299.72236 * 12 2 1 14 14 C 1.36608 * 120.66842 * 179.73337 * 13 12 2 15 15 C 1.39745 * 119.88347 * 0.56723 * 14 13 12 16 16 N 1.35775 * 133.59949 * 179.72300 * 15 14 13 17 17 C 1.30111 * 109.64321 * 179.97438 * 16 15 14 18 18 N 1.36033 * 110.10062 * 0.02562 * 17 16 15 19 19 H 0.96999 * 126.34803 * 179.97438 * 18 17 16 20 20 C 1.38056 * 107.30313 * 359.97438 * 18 17 16 21 21 C 1.37850 * 119.77550 * 120.00202 * 12 2 1 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 26 26 H 1.07995 * 119.66894 * 0.02732 * 13 12 2 27 27 H 1.07998 * 120.05965 * 180.26030 * 14 13 12 28 28 H 1.08003 * 124.95013 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.15495 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4191 5.2204 11 1 1.8282 -2.5197 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.6989 -2.0408 -1.4424 14 6 2.1397 -2.7011 -2.5542 15 6 2.9445 -2.0379 -3.4845 16 7 3.5281 -2.4111 -4.6522 17 6 4.1885 -1.4074 -5.1515 18 7 4.0746 -0.3223 -4.3390 19 1 4.4730 0.5499 -4.4855 20 6 3.2870 -0.6926 -3.2674 21 6 2.8246 -0.0361 -2.1348 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 3.4843 26 1 1.0808 -2.5581 -0.7236 27 1 1.8708 -3.7351 -2.7114 28 1 4.7465 -1.4324 -6.0759 29 1 3.0845 0.9979 -1.9630 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:07 Heat of formation + Delta-G solvation = 58.441892 kcal Electronic energy + Delta-G solvation = -13729.028601 eV Core-core repulsion = 11424.269679 eV Total energy + Delta-G solvation = -2304.758921 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60294 -37.37112 -33.86239 -32.66826 -30.87798 -29.40153 -27.49275 -25.12759 -22.69952 -22.33754 -21.01389 -19.79340 -17.61981 -16.51553 -15.74523 -15.20300 -14.76517 -14.42886 -13.65241 -13.32508 -13.18291 -12.62008 -11.77418 -11.63571 -11.20468 -11.06927 -10.89007 -10.66502 -10.40018 -10.16198 -10.05681 -9.72770 -9.42541 -8.98096 -8.38233 -7.80749 -7.39038 -6.02229 -4.09140 1.56179 2.15078 3.24853 3.27055 3.31844 3.36096 3.40055 4.39393 4.55286 4.62432 5.07872 5.28742 5.64570 5.78913 5.84288 6.00819 6.12323 6.44605 6.64586 6.84366 6.91254 6.99494 7.17905 7.18716 7.33125 7.55466 7.67154 7.71620 7.94701 8.07763 8.23186 8.37640 8.93384 9.55594 11.03308 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048679 B = 0.007369 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.055231 B = 3798.956079 C = 3894.531891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.072 3.928 3 H 0.035 0.965 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.005 4.005 13 C -0.108 4.108 14 C -0.076 4.076 15 C 0.018 3.982 16 N -0.497 5.497 17 C 0.234 3.766 18 N -0.608 5.608 19 H 0.418 0.582 20 C 0.053 3.947 21 C -0.138 4.138 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.009 0.991 25 H 0.261 0.739 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.207 0.793 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -0.998 -10.800 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.053 0.947 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.007 4.007 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.099 4.099 16 N -0.218 5.218 17 C -0.053 4.053 18 N -0.220 5.220 19 H 0.256 0.744 20 C -0.056 4.056 21 C -0.159 4.159 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.224 0.776 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.801 -1.766 -10.982 11.754 hybrid contribution 0.757 0.834 1.012 1.515 sum 4.559 -0.932 -9.969 11.002 Atomic orbital electron populations 1.21789 0.97405 0.99495 1.00323 1.17902 0.92985 0.95409 0.88303 0.94713 1.21064 1.31306 1.12490 0.89754 0.92354 1.24952 0.95009 0.94981 0.98933 1.69874 1.36594 1.22878 1.23566 0.86629 0.79231 0.79833 0.82177 1.20296 1.21323 1.20145 1.20495 0.91790 0.93560 0.94812 1.20707 1.00809 0.94793 0.96504 1.19981 0.97296 0.99335 0.92952 1.18929 1.03765 0.91956 0.95229 1.70301 1.13337 1.28421 1.09703 1.25070 1.00623 0.82167 0.97486 1.43065 1.44690 1.14276 1.20013 0.74437 1.18978 0.98407 0.96449 0.91735 1.19905 1.03112 0.99936 0.92975 0.95060 0.89546 0.97214 0.92875 0.85127 0.86265 0.77612 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.78 37.16 0.33 -2.80 15 2 C 0.07 1.77 2.47 -92.92 -0.23 1.54 15 3 H 0.03 0.91 7.86 -51.93 -0.41 0.50 15 4 C -0.51 -13.57 8.22 -34.44 -0.28 -13.85 15 5 H 0.06 1.56 7.59 -52.49 -0.40 1.16 15 6 C 0.06 1.69 5.30 -17.81 -0.09 1.59 15 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 15 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 15 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 12 C 0.00 -0.11 4.74 -104.56 -0.50 -0.60 15 13 C -0.11 -2.18 8.61 -39.97 -0.34 -2.53 15 14 C -0.08 -1.43 10.05 -39.61 -0.40 -1.83 15 15 C 0.02 0.34 7.23 -84.70 -0.61 -0.27 15 16 N -0.50 -8.62 11.27 -12.05 -0.14 -8.76 15 17 C 0.23 3.02 12.97 -89.79 -1.16 1.86 15 18 N -0.61 -8.08 6.23 -11.76 -0.07 -8.15 15 19 H 0.42 3.91 8.96 -40.82 -0.37 3.55 15 20 C 0.05 0.95 7.31 -83.99 -0.61 0.34 15 21 C -0.14 -2.69 9.68 -39.50 -0.38 -3.07 15 22 H 0.03 0.70 7.38 -51.93 -0.38 0.31 15 23 H 0.09 2.23 6.07 -51.93 -0.32 1.92 15 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 26 H 0.13 2.59 7.55 -52.49 -0.40 2.19 15 27 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 28 H 0.21 1.53 8.06 -52.48 -0.42 1.11 15 29 H 0.12 2.10 7.93 -52.49 -0.42 1.68 15 LS Contribution 250.97 15.07 3.78 3.78 Total: -1.00 -30.79 250.97 -8.20 -38.99 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.09 Total: 1.98 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -4.29 Total: -19.62 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.42 Total: -41.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.79 -8.20 -38.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.429 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds