Wall clock time and date at job start Mon Mar 30 2020 20:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 60.00398 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00019 * 8 6 4 12 12 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 13 13 C 1.38781 * 119.77335 * 299.72236 * 12 2 1 14 14 C 1.36608 * 120.66842 * 179.73337 * 13 12 2 15 15 C 1.39745 * 119.88347 * 0.56723 * 14 13 12 16 16 N 1.35775 * 133.59949 * 179.72300 * 15 14 13 17 17 C 1.30111 * 109.64321 * 179.97438 * 16 15 14 18 18 N 1.36033 * 110.10062 * 0.02562 * 17 16 15 19 19 H 0.96999 * 126.34803 * 179.97438 * 18 17 16 20 20 C 1.38056 * 107.30313 * 359.97438 * 18 17 16 21 21 C 1.37850 * 119.77550 * 120.00202 * 12 2 1 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 26 26 H 1.07995 * 119.66894 * 0.02732 * 13 12 2 27 27 H 1.07998 * 120.05965 * 180.26030 * 14 13 12 28 28 H 1.08003 * 124.95013 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.15495 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4191 5.2204 11 1 1.8282 -2.5197 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.6989 -2.0408 -1.4424 14 6 2.1397 -2.7011 -2.5542 15 6 2.9445 -2.0379 -3.4845 16 7 3.5281 -2.4111 -4.6522 17 6 4.1885 -1.4074 -5.1515 18 7 4.0746 -0.3223 -4.3390 19 1 4.4730 0.5499 -4.4855 20 6 3.2870 -0.6926 -3.2674 21 6 2.8246 -0.0361 -2.1348 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 3.4843 26 1 1.0808 -2.5581 -0.7236 27 1 1.8708 -3.7351 -2.7114 28 1 4.7465 -1.4324 -6.0759 29 1 3.0845 0.9979 -1.9630 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:06 Heat of formation + Delta-G solvation = 40.515939 kcal Electronic energy + Delta-G solvation = -13729.805928 eV Core-core repulsion = 11424.269679 eV Total energy + Delta-G solvation = -2305.536249 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.87628 -38.90997 -35.69032 -34.00540 -32.71153 -30.81539 -29.03224 -27.17269 -24.21083 -23.80904 -22.27235 -21.45654 -18.97438 -18.19675 -17.43932 -16.83794 -16.14557 -16.02634 -15.13111 -14.75761 -14.58496 -14.46269 -13.52638 -13.38058 -13.04487 -12.79814 -12.53090 -12.39255 -12.10152 -11.98872 -11.56185 -11.41763 -10.95623 -10.86312 -10.43906 -9.20685 -8.86051 -8.07061 -6.20909 0.18760 0.68624 1.44704 1.45248 1.53061 2.00851 2.15801 2.45900 3.03622 3.20911 3.49361 3.87179 4.27010 4.44171 4.48886 4.56285 4.69859 4.86910 4.94269 5.16849 5.22944 5.30334 5.52123 5.56984 5.61557 5.72434 6.01950 6.09894 6.13801 6.39066 6.64165 6.87020 7.01340 7.46709 8.96844 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048679 B = 0.007369 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.055231 B = 3798.956079 C = 3894.531891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.075 3.925 3 H 0.008 0.992 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.270 1.270 12 C -0.036 4.036 13 C -0.118 4.118 14 C -0.080 4.080 15 C 0.005 3.995 16 N -0.539 5.539 17 C 0.270 3.730 18 N -0.593 5.593 19 H 0.439 0.561 20 C 0.041 3.959 21 C -0.135 4.135 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.268 0.732 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -1.445 -12.631 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 H 0.026 0.974 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.038 4.038 13 C -0.138 4.138 14 C -0.099 4.099 15 C -0.112 4.112 16 N -0.260 5.260 17 C -0.017 4.017 18 N -0.206 5.206 19 H 0.280 0.720 20 C -0.069 4.069 21 C -0.156 4.156 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.154 0.846 28 H 0.283 0.717 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.283 -2.186 -12.825 14.042 hybrid contribution 0.400 0.996 1.380 1.748 sum 5.683 -1.190 -11.445 12.834 Atomic orbital electron populations 1.21633 0.97189 0.99456 0.99734 1.17728 0.93256 0.94012 0.89365 0.97365 1.21335 1.31143 1.12366 0.91047 0.93041 1.25674 0.95250 0.95674 1.01624 1.69997 1.37508 1.24003 1.24072 0.85696 0.78656 0.78933 0.78898 1.20018 1.20894 1.19554 1.20221 0.94353 0.94360 0.94834 1.20600 1.01533 0.94416 0.97222 1.20116 0.97174 1.00090 0.92538 1.19228 1.03566 0.92474 0.95915 1.70345 1.15545 1.30439 1.09628 1.26293 0.97457 0.80344 0.97640 1.43093 1.43454 1.15631 1.18449 0.71963 1.18899 0.99318 0.96233 0.92468 1.19910 1.02351 1.00174 0.93208 0.94730 0.92043 0.95681 0.92901 0.85796 0.84623 0.71684 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.78 71.98 0.63 -5.31 15 2 C 0.07 3.78 2.47 -12.28 -0.03 3.75 15 3 H 0.01 0.45 7.86 -2.39 -0.02 0.43 15 4 C -0.52 -28.51 8.22 25.60 0.21 -28.30 15 5 H 0.05 2.82 7.59 -2.91 -0.02 2.80 15 6 C 0.02 0.90 5.30 84.66 0.45 1.35 15 7 N -0.92 -52.21 11.32 21.45 0.24 -51.96 15 8 Si 0.95 43.44 29.54 68.60 2.03 45.47 15 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 12 C -0.04 -1.58 4.74 -19.83 -0.09 -1.68 15 13 C -0.12 -4.82 8.61 22.02 0.19 -4.63 15 14 C -0.08 -2.97 10.05 22.25 0.22 -2.74 15 15 C 0.00 0.17 7.23 39.45 0.29 0.46 15 16 N -0.54 -17.00 11.27 -192.03 -2.16 -19.17 15 17 C 0.27 5.67 12.97 180.06 2.33 8.01 15 18 N -0.59 -13.48 6.23 -191.12 -1.19 -14.67 15 19 H 0.44 6.35 8.96 -92.71 -0.83 5.52 15 20 C 0.04 1.40 7.31 38.86 0.28 1.68 15 21 C -0.14 -5.24 9.68 22.32 0.22 -5.02 15 22 H 0.03 1.59 7.38 -2.39 -0.02 1.57 15 23 H 0.06 3.27 6.07 -2.39 -0.01 3.26 15 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 25 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 26 H 0.12 5.08 7.55 -2.91 -0.02 5.06 15 27 H 0.14 4.43 8.06 -2.91 -0.02 4.41 15 28 H 0.27 2.07 8.06 -2.91 -0.02 2.05 15 29 H 0.12 4.42 7.93 -2.91 -0.02 4.39 15 Total: -1.00 -67.57 250.97 3.95 -63.62 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.33 Total: 9.15 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.70 Total: -32.43 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.11 Total: -85.80 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.57 3.95 -63.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.139 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds