Wall clock time and date at job start Mon Mar 30 2020 20:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 N 1.30237 * 126.10607 * 60.01425 * 12 2 1 14 14 N 1.39877 * 110.08191 * 180.02562 * 13 12 2 15 15 H 0.96998 * 125.46199 * 180.02562 * 14 13 12 16 16 C 1.37035 * 109.07957 * 0.02562 * 14 13 12 17 17 C 1.39288 * 133.85567 * 179.97438 * 16 14 13 18 18 C 1.36592 * 119.85076 * 179.20891 * 17 16 14 19 19 C 1.38965 * 120.81833 * 0.65819 * 18 17 16 20 20 C 1.36468 * 120.62351 * 359.59320 * 19 18 17 21 21 C 1.39939 * 119.64066 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 24 24 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.07999 * 120.06971 * 359.97352 * 17 16 14 27 27 H 1.08009 * 119.59053 * 180.22960 * 18 17 16 28 28 H 1.07999 * 119.69030 * 179.57850 * 19 18 17 29 29 H 1.08003 * 120.17553 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 7 1.7924 -1.9494 1.5529 14 7 2.4220 -2.2614 2.7624 15 1 2.3906 -3.1227 3.2073 16 6 3.0904 -1.1552 3.2179 17 6 3.8696 -0.8935 4.3423 18 6 4.4278 0.3418 4.5102 19 6 4.2177 1.3506 3.5779 20 6 3.4546 1.1248 2.4693 21 6 2.8792 -0.1352 2.2701 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 1.9030 -0.5275 -4.4376 26 1 4.0423 -1.6694 5.0735 27 1 5.0344 0.5389 5.3819 28 1 4.6622 2.3227 3.7323 29 1 3.2957 1.9142 1.7496 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261274758.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:09 Heat of formation + Delta-G solvation = 81.329653 kcal Electronic energy + Delta-G solvation = -13850.529547 eV Core-core repulsion = 11546.763114 eV Total energy + Delta-G solvation = -2303.766434 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75148 -36.83308 -34.68982 -32.03458 -30.70968 -29.31838 -28.66342 -25.08756 -22.92626 -22.42912 -21.65957 -18.65082 -17.44064 -16.78785 -16.07844 -15.00879 -14.82636 -14.21607 -13.76919 -13.59046 -13.23828 -12.80534 -12.20775 -11.76628 -11.63573 -11.36271 -11.10581 -10.81404 -10.57351 -10.20435 -9.96897 -9.61455 -9.39653 -9.05803 -8.56819 -8.24865 -7.52732 -6.07020 -4.07254 1.34332 1.84787 3.15475 3.23899 3.28459 3.36823 3.39987 4.14842 4.39567 4.93864 5.07404 5.19842 5.23696 5.36674 5.54563 5.68947 6.02400 6.15417 6.19813 6.36436 6.44317 6.61323 6.66458 6.80638 6.87195 7.06220 7.20561 7.36281 7.64294 7.79368 8.32199 8.50698 8.97897 9.51745 11.06042 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041156 B = 0.008887 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.171432 B = 3150.069202 C = 3403.291830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.506 4.506 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.264 1.264 12 C 0.157 3.843 13 N -0.250 5.250 14 N -0.526 5.526 15 H 0.432 0.568 16 C 0.125 3.875 17 C -0.153 4.153 18 C -0.076 4.076 19 C -0.176 4.176 20 C -0.029 4.029 21 C -0.175 4.175 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.265 0.735 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 3.504 14.397 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.544 4.544 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.189 1.189 12 C -0.021 4.021 13 N -0.062 5.062 14 N -0.237 5.237 15 H 0.275 0.725 16 C 0.008 3.992 17 C -0.175 4.175 18 C -0.097 4.097 19 C -0.195 4.195 20 C -0.050 4.050 21 C -0.183 4.183 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.177 2.364 13.854 14.104 hybrid contribution -0.103 0.842 0.288 0.896 sum 1.074 3.206 14.142 14.541 Atomic orbital electron populations 1.22137 0.97592 1.01597 0.98791 1.17920 0.92232 0.95417 0.88556 0.93342 1.20826 1.32346 1.13557 0.87705 0.90510 1.24952 0.95673 0.96702 0.95633 1.69882 1.45434 1.40241 0.97925 0.86865 0.80714 0.83660 0.77098 1.20423 1.22362 1.18939 1.24039 0.93137 0.90050 0.94873 1.76748 1.17095 1.16112 0.96230 1.46101 1.46082 1.11482 1.20080 0.72480 1.18917 0.95833 0.88773 0.95677 1.19718 1.02303 0.98442 0.97032 1.20596 0.98001 0.92478 0.98633 1.20555 1.03318 0.99612 0.96052 1.20448 0.93424 0.94781 0.96305 1.20067 1.05805 0.95535 0.96887 0.92145 0.95003 0.93603 0.92517 0.86376 0.86035 0.86112 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.66 37.16 0.32 -2.86 15 2 C 0.08 1.91 2.33 -92.92 -0.22 1.69 15 3 H 0.05 1.13 7.19 -51.93 -0.37 0.75 15 4 C -0.51 -14.38 9.13 -34.44 -0.31 -14.70 15 5 H 0.08 2.44 7.98 -52.49 -0.42 2.02 15 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 15 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 15 8 Si 0.89 21.48 24.37 -169.99 -4.14 17.34 15 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 15 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 15 11 H -0.26 -5.99 6.53 56.52 0.37 -5.62 15 12 C 0.16 3.54 5.87 -80.19 -0.47 3.07 15 13 N -0.25 -5.51 12.55 34.84 0.44 -5.07 15 14 N -0.53 -9.31 7.37 32.36 0.24 -9.07 15 15 H 0.43 5.93 8.96 -182.77 -1.64 4.29 15 16 C 0.13 2.18 7.34 -84.17 -0.62 1.56 15 17 C -0.15 -2.11 10.03 -39.79 -0.40 -2.51 15 18 C -0.08 -0.96 9.96 -39.91 -0.40 -1.36 15 19 C -0.18 -2.39 9.97 -39.95 -0.40 -2.78 15 20 C -0.03 -0.48 10.07 -39.58 -0.40 -0.88 15 21 C -0.17 -3.42 6.33 -105.21 -0.67 -4.09 15 22 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.05 1.03 3.27 -51.93 -0.17 0.86 15 25 H 0.26 7.56 8.31 -40.82 -0.34 7.23 15 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.12 1.12 8.06 -52.48 -0.42 0.70 15 28 H 0.12 1.30 8.06 -52.49 -0.42 0.87 15 29 H 0.13 1.96 8.06 -52.48 -0.42 1.53 15 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -32.01 248.12 -6.93 -38.94 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.32 Total: 1.67 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.65 Total: -20.88 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 1.45 Total: -40.81 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.01 -6.93 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274758.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.265 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds