Wall clock time and date at job start Mon Mar 30 2020 20:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 N 1.30245 * 126.10495 * 299.68940 * 12 2 1 14 14 N 1.39874 * 110.08318 * 179.84303 * 13 12 2 15 15 H 0.97000 * 125.46235 * 180.16375 * 14 13 12 16 16 C 1.37040 * 109.07780 * 0.43267 * 14 13 12 17 17 C 1.39287 * 133.84968 * 179.70636 * 16 14 13 18 18 C 1.36591 * 119.85064 * 180.02562 * 17 16 14 19 19 C 1.38956 * 120.81838 * 0.03798 * 18 17 16 20 20 C 1.36475 * 120.62787 * 359.97438 * 19 18 17 21 21 C 1.39944 * 119.63465 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08002 * 120.07113 * 0.05021 * 17 16 14 27 27 H 1.08000 * 119.58874 * 180.02562 * 18 17 16 28 28 H 1.07996 * 119.69100 * 179.97438 * 19 18 17 29 29 H 1.08001 * 120.18245 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 7 1.7967 -1.9506 -1.5507 14 7 2.4222 -2.2609 -2.7627 15 1 2.3907 -3.1221 -3.2079 16 6 3.0916 -1.1550 -3.2173 17 6 3.8728 -0.8939 -4.3406 18 6 4.4188 0.3458 -4.5158 19 6 4.2061 1.3554 -3.5850 20 6 3.4454 1.1286 -2.4748 21 6 2.8743 -0.1330 -2.2733 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 4.0460 -1.6699 -5.0716 27 1 5.0234 0.5438 -5.3885 28 1 4.6469 2.3288 -3.7415 29 1 3.2851 1.9183 -1.7558 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274759.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:10 Heat of formation + Delta-G solvation = 53.873491 kcal Electronic energy + Delta-G solvation = -13798.603952 eV Core-core repulsion = 11493.646930 eV Total energy + Delta-G solvation = -2304.957022 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06273 -38.04085 -36.40498 -33.71274 -31.79855 -30.56216 -29.84633 -27.24750 -24.42212 -23.69474 -22.87332 -20.35843 -18.72194 -18.37052 -17.40604 -16.65975 -16.01739 -15.67355 -15.12159 -14.78340 -14.73107 -14.41796 -13.52903 -12.99625 -12.86215 -12.75184 -12.61114 -12.48533 -12.22095 -12.05083 -11.77507 -11.40303 -11.13476 -10.70883 -10.48814 -9.52442 -8.78682 -8.11446 -6.24892 0.13415 0.67940 1.41698 1.43457 1.50984 1.70667 1.97750 2.44233 2.96911 3.15850 3.76663 3.82955 4.01223 4.24161 4.49357 4.58952 4.77769 4.82601 4.96551 5.09842 5.14152 5.20007 5.48165 5.56351 5.64442 5.69829 5.79032 5.99390 6.09658 6.25911 6.60563 6.77369 6.90460 7.41594 8.93250 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040349 B = 0.008183 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.774425 B = 3420.765540 C = 3546.596366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.113 3.887 3 H 0.030 0.970 4 C -0.523 4.523 5 H 0.040 0.960 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.124 3.876 13 N -0.289 5.289 14 N -0.518 5.518 15 H 0.446 0.554 16 C 0.112 3.888 17 C -0.149 4.149 18 C -0.065 4.065 19 C -0.162 4.162 20 C -0.056 4.056 21 C -0.211 4.211 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.266 0.734 26 H 0.155 0.845 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -0.340 -13.262 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 H 0.048 0.952 4 C -0.562 4.562 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.202 1.202 12 C -0.054 4.054 13 N -0.103 5.103 14 N -0.233 5.233 15 H 0.292 0.708 16 C -0.004 4.004 17 C -0.171 4.171 18 C -0.085 4.085 19 C -0.181 4.181 20 C -0.077 4.077 21 C -0.219 4.219 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.187 0.813 28 H 0.172 0.828 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.559 -1.352 -12.787 14.009 hybrid contribution 0.326 -0.299 0.722 0.847 sum 5.886 -1.651 -12.065 13.525 Atomic orbital electron populations 1.21582 0.96730 0.99115 1.00190 1.17279 0.93254 0.93841 0.86397 0.95157 1.21125 1.31685 1.12244 0.91107 0.94139 1.25611 0.95075 0.95691 1.01414 1.69954 1.36940 1.23667 1.24421 0.85650 0.78728 0.78660 0.78837 1.19844 1.20052 1.20198 1.24341 0.94394 0.90711 0.95931 1.76539 1.18716 1.16641 0.98407 1.45973 1.45850 1.12490 1.19025 0.70806 1.19329 0.96531 0.87893 0.96677 1.20216 1.00866 0.99999 0.96058 1.21172 0.96919 0.91150 0.99248 1.21010 1.01230 1.01463 0.94438 1.20640 0.95010 0.93993 0.98025 1.20319 1.06937 0.97418 0.97274 0.95611 0.95658 0.90985 0.92498 0.82783 0.81301 0.82809 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.95 71.98 0.64 -5.43 15 2 C 0.11 6.04 2.74 -12.29 -0.03 6.01 15 3 H 0.03 1.69 8.14 -2.38 -0.02 1.67 15 4 C -0.52 -30.28 8.55 25.60 0.22 -30.06 15 5 H 0.04 2.42 7.74 -2.91 -0.02 2.39 15 6 C 0.02 1.21 5.30 84.65 0.45 1.66 15 7 N -0.91 -52.20 11.31 21.45 0.24 -51.96 15 8 Si 0.96 44.64 29.54 68.60 2.03 46.67 15 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 12 C 0.12 6.01 5.88 44.79 0.26 6.27 15 13 N -0.29 -13.48 12.55 -43.69 -0.55 -14.03 15 14 N -0.52 -18.72 7.37 -51.53 -0.38 -19.10 15 15 H 0.45 12.22 8.96 -213.47 -1.91 10.31 15 16 C 0.11 3.90 7.34 39.21 0.29 4.19 15 17 C -0.15 -3.71 10.03 22.14 0.22 -3.49 15 18 C -0.06 -1.38 9.96 22.06 0.22 -1.16 15 19 C -0.16 -4.09 9.97 22.03 0.22 -3.87 15 20 C -0.06 -1.95 10.07 22.27 0.22 -1.72 15 21 C -0.21 -8.72 6.33 -20.24 -0.13 -8.85 15 22 H 0.02 1.18 8.14 -2.38 -0.02 1.16 15 23 H 0.02 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.07 3.95 6.06 -2.38 -0.01 3.93 15 25 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 26 H 0.15 2.67 8.06 -2.91 -0.02 2.64 15 27 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 28 H 0.15 2.81 8.06 -2.91 -0.02 2.79 15 29 H 0.12 4.18 8.06 -2.91 -0.02 4.15 15 Total: -1.00 -67.55 254.91 3.17 -64.38 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.75 Total: 10.47 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 2.59 Total: -36.44 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -0.69 Total: -85.08 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.55 3.17 -64.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274759.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.249 kcal (2) G-P(sol) polarization free energy of solvation -67.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds