Wall clock time and date at job start Mon Mar 30 2020 20:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47086 * 2 1 4 4 C 1.50701 * 109.47118 * 240.00160 * 2 1 3 5 5 H 1.08000 * 119.99744 * 240.00264 * 4 2 1 6 6 C 1.37870 * 120.00148 * 59.99973 * 4 2 1 7 7 N 1.31517 * 120.00127 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46851 * 89.99926 * 8 6 4 10 10 H 1.48495 * 109.47283 * 209.99902 * 8 6 4 11 11 H 1.48499 * 109.47128 * 330.00410 * 8 6 4 12 12 C 1.50697 * 109.46918 * 120.00180 * 2 1 3 13 13 C 1.38965 * 119.59636 * 60.00213 * 12 2 1 14 14 C 1.36465 * 120.62952 * 179.97438 * 13 12 2 15 15 C 1.39946 * 119.63644 * 359.97438 * 14 13 12 16 16 C 1.45925 * 134.02375 * 180.02562 * 15 14 13 17 17 N 1.30242 * 107.78110 * 180.02562 * 16 15 14 18 18 N 1.39880 * 110.08838 * 0.02562 * 17 16 15 19 19 H 0.96998 * 125.46058 * 179.97438 * 18 17 16 20 20 C 1.37042 * 109.07406 * 359.97438 * 18 17 16 21 21 C 1.36600 * 119.59038 * 239.97979 * 12 2 1 22 22 H 1.08999 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47541 * 300.00019 * 1 2 3 24 24 H 1.09006 * 109.47156 * 60.00118 * 1 2 3 25 25 H 0.96995 * 120.00311 * 179.97438 * 7 6 4 26 26 H 1.08001 * 119.68212 * 0.25125 * 13 12 2 27 27 H 1.07999 * 120.18146 * 180.02562 * 14 13 12 28 28 H 1.08001 * 126.11111 * 0.02562 * 16 15 14 29 29 H 1.07993 * 120.07035 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0323 -0.7104 1.2304 13 6 1.6914 -2.0409 1.4419 14 6 2.1350 -2.7048 2.5486 15 6 2.9412 -2.0386 3.4785 16 6 3.5744 -2.4274 4.7344 17 7 4.2200 -1.3928 5.1914 18 7 4.0681 -0.3086 4.3207 19 1 4.4551 0.5720 4.4456 20 6 3.2847 -0.6901 3.2629 21 6 2.8174 -0.0387 2.1239 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.7095 1.1619 -3.4843 26 1 1.0732 -2.5557 0.7213 27 1 1.8661 -3.7390 2.7056 28 1 3.5177 -3.3995 5.2016 29 1 3.0749 0.9952 1.9477 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277520.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:13 Heat of formation + Delta-G solvation = 54.647150 kcal Electronic energy + Delta-G solvation = -13698.194926 eV Core-core repulsion = 11393.271452 eV Total energy + Delta-G solvation = -2304.923474 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05523 -38.79020 -35.69303 -33.37858 -32.75211 -30.26594 -29.42108 -27.18448 -24.22789 -23.56365 -22.43693 -21.34870 -18.75459 -18.03601 -17.26590 -16.65099 -15.97796 -15.67436 -15.42852 -14.76624 -14.61169 -14.07762 -13.64920 -13.29249 -13.06352 -12.80500 -12.38828 -12.22532 -12.10039 -11.96154 -11.76468 -11.29806 -11.17830 -10.95898 -10.45040 -9.26922 -8.85099 -8.08057 -6.21777 0.15795 0.71427 1.43891 1.45184 1.54857 1.66287 1.85416 2.45225 3.01264 3.20629 3.76583 3.86091 3.98838 4.26761 4.55779 4.58293 4.78758 4.95231 4.97112 5.14461 5.22982 5.29866 5.52163 5.57430 5.62058 5.73387 6.03610 6.10502 6.15601 6.35440 6.46000 6.71004 6.86695 7.46149 8.96575 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.048273 B = 0.007329 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.897727 B = 3819.584196 C = 3915.099810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.068 3.932 3 H 0.005 0.995 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 C -0.001 4.001 13 C -0.157 4.157 14 C -0.036 4.036 15 C -0.215 4.215 16 C 0.090 3.910 17 N -0.282 5.282 18 N -0.517 5.517 19 H 0.444 0.556 20 C 0.121 3.879 21 C -0.175 4.175 22 H 0.037 0.963 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.124 0.876 27 H 0.160 0.840 28 H 0.237 0.763 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -6.085 10.661 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 H 0.023 0.977 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.196 1.196 12 C -0.004 4.004 13 C -0.176 4.176 14 C -0.056 4.056 15 C -0.223 4.223 16 C -0.108 4.108 17 N -0.095 5.095 18 N -0.233 5.233 19 H 0.290 0.710 20 C 0.005 3.995 21 C -0.197 4.197 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.178 0.822 28 H 0.253 0.747 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.330 -5.506 11.499 13.177 hybrid contribution -0.063 0.393 -1.753 1.797 sum 3.267 -5.113 9.746 11.481 Atomic orbital electron populations 1.21618 0.96967 0.99649 0.99689 1.17823 0.93468 0.94002 0.89709 0.97732 1.21341 1.31093 1.12363 0.90883 0.92782 1.25691 0.95262 0.95657 1.01726 1.70010 1.37665 1.23999 1.24019 0.85613 0.78894 0.78385 0.79127 1.19797 1.21119 1.19582 1.20053 0.91951 0.94610 0.93780 1.20699 1.03716 0.94336 0.98889 1.20600 0.93559 1.00294 0.91128 1.20196 1.08241 0.93999 0.99839 1.25668 0.93740 0.99153 0.92226 1.76431 1.21871 0.95339 1.15893 1.45907 1.46696 1.13175 1.17557 0.71023 1.18900 0.94530 0.95439 0.90602 1.19720 1.05077 1.00553 0.94346 0.94350 0.95777 0.92134 0.92929 0.85851 0.82237 0.74728 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.78 71.98 0.63 -5.17 15 2 C 0.07 3.42 2.46 -12.29 -0.03 3.39 15 3 H 0.00 0.25 7.83 -2.39 -0.02 0.23 15 4 C -0.52 -27.95 8.22 25.60 0.21 -27.74 15 5 H 0.05 2.90 7.59 -2.91 -0.02 2.87 15 6 C 0.02 0.83 5.30 84.65 0.45 1.28 15 7 N -0.92 -52.02 11.32 21.45 0.24 -51.78 15 8 Si 0.95 42.90 29.54 68.60 2.03 44.93 15 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 12 C 0.00 -0.06 4.71 -20.07 -0.09 -0.15 15 13 C -0.16 -5.87 8.60 22.03 0.19 -5.68 15 14 C -0.04 -1.08 10.07 22.27 0.22 -0.85 15 15 C -0.21 -6.64 6.36 -20.24 -0.13 -6.77 15 16 C 0.09 2.20 12.28 86.92 1.07 3.26 15 17 N -0.28 -7.92 12.55 -53.09 -0.67 -8.59 15 18 N -0.52 -15.18 7.37 -51.54 -0.38 -15.56 15 19 H 0.44 10.59 8.96 -213.47 -1.91 8.68 15 20 C 0.12 4.15 7.34 39.21 0.29 4.43 15 21 C -0.17 -6.81 9.63 22.14 0.21 -6.59 15 22 H 0.04 1.72 7.35 -2.39 -0.02 1.70 15 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 24 H 0.06 3.20 6.07 -2.38 -0.01 3.18 15 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 15 26 H 0.12 4.63 7.53 -2.91 -0.02 4.61 15 27 H 0.16 3.44 8.06 -2.91 -0.02 3.41 15 28 H 0.24 3.27 8.06 -2.91 -0.02 3.25 15 29 H 0.12 4.38 7.90 -2.91 -0.02 4.36 15 Total: -1.00 -62.81 251.67 3.50 -59.32 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.75 Total: 12.26 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 3.02 Total: -40.58 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -0.80 Total: -75.92 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.81 3.50 -59.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277520.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.965 kcal (2) G-P(sol) polarization free energy of solvation -62.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds