Wall clock time and date at job start Mon Mar 30 2020 20:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 C 1.34952 * 119.69179 * 84.99880 * 12 2 1 14 14 C 1.40476 * 120.29963 * 179.97438 * 13 12 2 15 15 C 1.36031 * 119.68999 * 0.02562 * 14 13 12 16 16 C 1.40930 * 119.32818 * 359.97438 * 15 14 13 17 17 N 1.32556 * 132.32748 * 179.97438 * 16 15 14 18 18 C 1.33517 * 109.16247 * 180.02562 * 17 16 15 19 19 C 1.35114 * 108.62182 * 0.02562 * 18 17 16 20 20 N 1.36474 * 119.69611 * 264.72939 * 12 2 1 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.85267 * 359.97438 * 13 12 2 26 26 H 1.08001 * 120.15567 * 180.02562 * 14 13 12 27 27 H 1.07998 * 120.33237 * 179.97438 * 15 14 13 28 28 H 1.07995 * 125.68832 * 180.02562 * 18 17 16 29 29 H 1.08001 * 126.40813 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 6 2.0323 -0.7104 1.2305 13 6 2.1588 -2.0540 1.2218 14 6 2.6263 -2.7292 2.3615 15 6 2.9516 -2.0223 3.4773 16 6 2.8140 -0.6198 3.4705 17 7 3.0490 0.3047 4.3910 18 6 2.7560 1.5069 3.8896 19 6 2.3228 1.3507 2.6194 20 7 2.3604 0.0114 2.3413 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7092 1.1618 -3.4843 25 1 1.8994 -2.6126 0.3347 26 1 2.7271 -3.8044 2.3519 27 1 3.3117 -2.5308 4.3594 28 1 2.8496 2.4473 4.4122 29 1 2.0095 2.1363 1.9477 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277536.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:17 Heat of formation + Delta-G solvation = 63.454963 kcal Electronic energy + Delta-G solvation = -14063.749982 eV Core-core repulsion = 11759.208443 eV Total energy + Delta-G solvation = -2304.541538 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.66610 -38.74101 -36.24596 -34.43109 -32.60117 -30.48421 -29.22370 -27.28337 -25.06241 -23.48442 -23.19629 -21.27162 -18.91414 -18.03473 -17.32966 -16.89725 -16.72587 -16.30584 -15.07682 -14.91898 -14.75194 -14.30946 -13.89602 -13.23443 -13.15309 -13.02625 -12.70061 -12.52349 -12.23594 -12.10722 -11.81814 -11.72255 -11.15168 -10.99677 -10.54346 -9.67781 -8.60208 -8.17725 -6.32895 0.01466 0.45719 1.45306 1.45883 1.53251 1.80522 1.99882 2.41396 2.69723 3.12829 3.41272 3.76195 3.95603 4.14767 4.32546 4.47470 4.58938 4.72770 4.83798 4.90717 5.00588 5.10631 5.33221 5.37805 5.47143 5.61693 5.73775 5.84142 5.88876 6.08796 6.33461 6.73319 6.92614 7.36520 8.87893 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040353 B = 0.009214 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.703971 B = 3038.184132 C = 3421.067317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.082 3.918 3 H 0.009 0.991 4 C -0.532 4.532 5 H 0.072 0.928 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.103 3.897 13 C -0.156 4.156 14 C -0.073 4.073 15 C -0.121 4.121 16 C 0.199 3.801 17 N -0.533 5.533 18 C 0.023 3.977 19 C -0.121 4.121 20 N -0.364 5.364 21 H 0.017 0.983 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.264 0.736 25 H 0.157 0.843 26 H 0.181 0.819 27 H 0.172 0.828 28 H 0.210 0.790 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 -4.730 6.713 8.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 H 0.027 0.973 4 C -0.570 4.570 5 H 0.090 0.910 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.001 4.001 13 C -0.176 4.176 14 C -0.096 4.096 15 C -0.141 4.141 16 C -0.043 4.043 17 N -0.255 5.255 18 C -0.127 4.127 19 C -0.252 4.252 20 N -0.035 5.035 21 H 0.036 0.964 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.175 0.825 26 H 0.199 0.801 27 H 0.189 0.811 28 H 0.226 0.774 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.862 -4.681 7.344 8.905 hybrid contribution -0.181 0.462 -1.826 1.892 sum 1.681 -4.219 5.518 7.146 Atomic orbital electron populations 1.21612 0.96169 0.99969 0.99953 1.17764 0.93652 0.94319 0.88016 0.97287 1.21405 1.32118 1.13286 0.90169 0.91006 1.25729 0.94874 0.95532 1.01973 1.69990 1.37062 1.23825 1.24508 0.85558 0.78584 0.79080 0.78184 1.18741 1.21264 1.19976 1.21213 0.97993 0.93434 0.87427 1.20983 1.03761 0.91681 1.01163 1.21507 0.95296 1.02293 0.90523 1.20518 1.04758 0.87172 1.01676 1.21652 1.03188 0.96188 0.83302 1.70679 1.26312 0.99390 1.29098 1.22925 1.00441 0.97352 0.92024 1.22949 1.16663 0.84398 1.01154 1.43089 1.40738 1.08134 1.11563 0.96387 0.91144 0.94132 0.92662 0.82537 0.80147 0.81082 0.77355 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.95 71.98 0.64 -4.90 15 2 C 0.08 3.94 2.37 -12.29 -0.03 3.91 15 3 H 0.01 0.49 7.28 -2.39 -0.02 0.47 15 4 C -0.53 -26.97 7.86 25.60 0.20 -26.77 15 5 H 0.07 3.47 6.32 -2.91 -0.02 3.45 15 6 C 0.02 0.96 5.30 84.65 0.45 1.41 15 7 N -0.92 -49.84 11.32 21.45 0.24 -49.60 15 8 Si 0.96 40.68 29.54 68.60 2.03 42.71 15 9 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 10 H -0.29 -12.12 7.11 99.48 0.71 -11.42 15 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 12 C 0.10 4.37 5.79 41.08 0.24 4.61 15 13 C -0.16 -5.63 8.79 22.06 0.19 -5.43 15 14 C -0.07 -2.05 10.07 22.30 0.22 -1.83 15 15 C -0.12 -3.72 10.11 22.42 0.23 -3.49 15 16 C 0.20 7.67 7.81 134.10 1.05 8.72 15 17 N -0.53 -20.47 11.32 -194.34 -2.20 -22.66 15 18 C 0.02 0.80 11.83 83.72 0.99 1.79 15 19 C -0.12 -4.60 11.06 83.19 0.92 -3.68 15 20 N -0.36 -15.02 2.95 -338.85 -1.00 -16.01 15 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 22 H 0.07 3.60 6.07 -2.39 -0.01 3.59 15 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 25 H 0.16 5.54 6.64 -2.91 -0.02 5.52 15 26 H 0.18 3.35 8.06 -2.91 -0.02 3.33 15 27 H 0.17 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.21 5.26 8.06 -2.91 -0.02 5.24 15 29 H 0.18 6.43 7.68 -2.91 -0.02 6.41 15 Total: -1.00 -61.08 249.14 5.33 -55.75 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.15 Total: 15.47 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 5.11 Total: -25.65 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.95 Total: -88.28 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -61.08 5.33 -55.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277536.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.203 kcal (2) G-P(sol) polarization free energy of solvation -61.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds