Wall clock time and date at job start Mon Mar 30 2020 20:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47606 * 2 1 4 4 C 1.50700 * 109.47377 * 239.99417 * 2 1 3 5 5 H 1.08004 * 119.99728 * 275.08473 * 4 2 1 6 6 C 1.37875 * 119.99924 * 95.07859 * 4 2 1 7 7 N 1.31515 * 120.00313 * 184.91459 * 6 4 2 8 8 Si 1.86799 * 119.99734 * 4.91704 * 6 4 2 9 9 H 1.48501 * 109.47405 * 84.82888 * 8 6 4 10 10 H 1.48508 * 109.47042 * 204.82566 * 8 6 4 11 11 H 1.48495 * 109.47613 * 324.82466 * 8 6 4 12 12 C 1.50711 * 109.46550 * 119.99801 * 2 1 3 13 13 C 1.35098 * 126.41091 * 85.02627 * 12 2 1 14 14 N 1.33511 * 108.62793 * 179.75510 * 13 12 2 15 15 C 1.32562 * 109.15626 * 0.36608 * 14 13 12 16 16 C 1.40933 * 132.32323 * 179.91775 * 15 14 13 17 17 C 1.36028 * 119.32394 * 179.68537 * 16 15 14 18 18 C 1.40470 * 119.69170 * 0.02562 * 17 16 15 19 19 C 1.34947 * 120.30621 * 359.97438 * 18 17 16 20 20 N 1.36484 * 120.60655 * 0.02562 * 19 18 17 21 21 H 1.09003 * 109.47290 * 175.03009 * 1 2 3 22 22 H 1.09001 * 109.47267 * 295.03208 * 1 2 3 23 23 H 1.09006 * 109.46571 * 55.03151 * 1 2 3 24 24 H 0.96992 * 119.99975 * 180.02562 * 7 6 4 25 25 H 1.08006 * 125.68354 * 0.02562 * 13 12 2 26 26 H 1.07995 * 120.33980 * 359.67142 * 16 15 14 27 27 H 1.07994 * 120.15336 * 179.97438 * 17 16 15 28 28 H 1.08009 * 119.84563 * 179.97438 * 18 17 16 29 29 H 1.07992 * 119.70002 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1343 -1.7857 -1.2292 6 6 2.3619 0.0120 -2.3574 7 7 2.7076 -0.6131 -3.4616 8 14 2.3172 1.8790 -2.3161 9 1 3.6029 2.3933 -1.7797 10 1 2.1110 2.3998 -3.6915 11 1 1.2021 2.3284 -1.4444 12 6 2.0322 -0.7104 1.2306 13 6 2.2106 -2.0422 1.3711 14 7 2.6726 -2.2833 2.6002 15 6 2.7873 -1.1362 3.2546 16 6 3.2184 -0.8276 4.5604 17 6 3.2367 0.4705 4.9667 18 6 2.8266 1.4820 4.0826 19 6 2.4163 1.1711 2.8351 20 7 2.3930 -0.1272 2.4147 21 1 -0.3634 -1.0238 -0.0890 22 1 -0.3634 0.4348 0.9311 23 1 -0.3633 0.5890 -0.8422 24 1 2.9398 -0.1048 -4.2544 25 1 2.0163 -2.7872 0.6136 26 1 3.5309 -1.6137 5.2318 27 1 3.5642 0.7220 5.9645 28 1 2.8397 2.5135 4.4027 29 1 2.1027 1.9566 2.1636 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278562.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:22 Heat of formation + Delta-G solvation = 80.401529 kcal Electronic energy + Delta-G solvation = -14009.778657 eV Core-core repulsion = 11705.971977 eV Total energy + Delta-G solvation = -2303.806680 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.23195 -37.00920 -34.61253 -32.94604 -31.44690 -29.69429 -27.49838 -25.31060 -23.32336 -22.38955 -21.74527 -19.67693 -17.09019 -16.63975 -16.24929 -15.47043 -15.32642 -14.43964 -14.31966 -13.39014 -12.95192 -12.53520 -12.38625 -12.11310 -11.78189 -11.56808 -11.27535 -11.02861 -10.81866 -10.54017 -10.17999 -9.91659 -9.58703 -9.11067 -8.67882 -8.28024 -7.12289 -6.19142 -4.19975 1.10040 1.75349 3.12593 3.18016 3.24117 3.27012 3.52551 3.98465 4.28985 4.67340 4.85957 5.07149 5.16131 5.19132 5.39320 5.82730 5.98997 6.02708 6.18850 6.23774 6.37420 6.43309 6.56764 6.58646 6.88741 6.97954 7.20045 7.35854 7.55489 7.66379 8.35221 8.51541 8.85253 9.40637 10.93498 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.009878 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.476427 B = 2833.950171 C = 3197.348585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.081 3.919 3 H 0.035 0.965 4 C -0.508 4.508 5 H 0.083 0.917 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.265 1.265 12 C -0.001 4.001 13 C 0.031 3.969 14 N -0.496 5.496 15 C 0.189 3.811 16 C -0.075 4.075 17 C -0.119 4.119 18 C -0.162 4.162 19 C 0.069 3.931 20 N -0.369 5.369 21 H 0.054 0.946 22 H 0.020 0.980 23 H 0.051 0.949 24 H 0.266 0.734 25 H 0.180 0.820 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 5.535 13.140 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.053 0.947 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.190 1.190 12 C -0.113 4.113 13 C -0.118 4.118 14 N -0.216 5.216 15 C -0.053 4.053 16 C -0.095 4.095 17 C -0.143 4.143 18 C -0.183 4.183 19 C -0.054 4.054 20 N -0.043 5.043 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.197 0.803 26 H 0.160 0.840 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.832 4.761 13.167 14.026 hybrid contribution -0.068 1.871 -0.515 1.942 sum -0.900 6.632 12.651 14.313 Atomic orbital electron populations 1.21987 0.97274 1.01317 0.98453 1.17795 0.92587 0.94934 0.88574 0.94690 1.20821 1.44169 0.95742 0.93855 0.89899 1.24991 0.94345 0.98105 0.95260 1.69867 1.45482 1.35853 1.01674 0.86951 0.78954 0.86671 0.77569 1.20172 1.21115 1.18992 1.22333 1.07665 0.94378 0.86947 1.22255 1.01591 0.94189 0.93738 1.70669 1.21105 1.23330 1.06487 1.20844 1.06665 0.83974 0.93834 1.20144 1.00340 0.97283 0.91723 1.20840 1.01389 0.92006 1.00066 1.20618 1.04312 1.00548 0.92844 1.21561 1.01313 0.85343 0.97172 1.42920 1.42271 1.06553 1.12524 0.92721 0.96108 0.93016 0.92367 0.80272 0.84018 0.84857 0.84016 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.16 37.16 0.34 -2.38 15 2 C 0.08 1.87 2.31 -92.92 -0.21 1.65 15 3 H 0.04 0.80 5.12 -51.93 -0.27 0.53 15 4 C -0.51 -13.62 8.57 -34.44 -0.30 -13.92 15 5 H 0.08 2.38 6.94 -52.48 -0.36 2.02 15 6 C 0.08 2.09 5.47 -17.82 -0.10 2.00 15 7 N -0.89 -26.32 13.96 55.43 0.77 -25.54 15 8 Si 0.87 20.52 26.99 -169.99 -4.59 15.93 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.27 -5.85 6.82 56.52 0.39 -5.46 15 12 C 0.00 -0.01 5.95 -81.47 -0.48 -0.50 15 13 C 0.03 0.69 10.98 -17.94 -0.20 0.49 15 14 N -0.50 -10.69 11.32 -12.78 -0.14 -10.84 15 15 C 0.19 3.67 7.81 -156.04 -1.22 2.45 15 16 C -0.07 -1.11 10.11 -39.36 -0.40 -1.51 15 17 C -0.12 -1.45 10.07 -39.54 -0.40 -1.85 15 18 C -0.16 -2.02 9.98 -39.91 -0.40 -2.42 15 19 C 0.07 1.08 10.82 -16.65 -0.18 0.90 15 20 N -0.37 -7.24 2.95 -58.46 -0.17 -7.42 15 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 25 H 0.18 3.84 7.27 -52.48 -0.38 3.46 15 26 H 0.14 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 15 28 H 0.14 1.26 8.06 -52.48 -0.42 0.83 15 29 H 0.16 2.18 7.92 -52.49 -0.42 1.76 15 LS Contribution 251.62 15.07 3.79 3.79 Total: -1.00 -31.01 251.62 -7.00 -38.00 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.11 Total: 1.15 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.54 Total: -15.07 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.46 Total: -43.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.59 Total: 15.93 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.01 -7.00 -38.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278562.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.405 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds