Wall clock time and date at job start Mon Mar 30 2020 20:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35761 * 125.37069 * 2 1 4 4 H 0.96998 * 124.62960 * 359.96320 * 3 2 1 5 5 C 1.37878 * 110.74918 * 180.02562 * 3 2 1 6 6 N 1.32711 * 132.57014 * 180.02562 * 5 3 2 7 7 C 1.31636 * 121.74235 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.23437 * 179.97438 * 7 6 5 9 9 C 1.38518 * 121.53342 * 359.95302 * 7 6 5 10 10 C 1.38446 * 119.28248 * 0.02562 * 9 7 6 11 11 C 1.39252 * 118.07346 * 0.02562 * 10 9 7 12 12 C 1.38899 * 125.37196 * 180.29460 * 2 1 3 13 13 C 1.40890 * 126.98660 * 0.06259 * 12 2 1 14 14 H 1.08001 * 119.99920 * 328.35948 * 13 12 2 15 15 C 1.39766 * 119.99750 * 148.36197 * 13 12 2 16 16 N 1.31033 * 119.99840 * 341.12722 * 15 13 12 17 17 Si 1.86799 * 119.99927 * 161.12483 * 15 13 12 18 18 H 1.48500 * 109.46742 * 59.99803 * 17 15 13 19 19 H 1.48498 * 109.47085 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47053 * 300.00357 * 17 15 13 21 21 H 1.09007 * 109.47112 * 95.21860 * 1 2 3 22 22 H 1.09002 * 109.47486 * 215.21696 * 1 2 3 23 23 H 1.09003 * 109.47728 * 335.21882 * 1 2 3 24 24 H 1.09001 * 109.47012 * 269.97704 * 8 7 6 25 25 H 1.09000 * 109.46902 * 29.97655 * 8 7 6 26 26 H 1.09002 * 109.47420 * 149.98002 * 8 7 6 27 27 H 1.08001 * 120.35694 * 180.02562 * 9 7 6 28 28 H 1.08003 * 120.96251 * 179.97438 * 10 9 7 29 29 H 0.96998 * 119.99706 * 177.30094 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2928 1.1070 0.0000 4 1 1.9610 2.0185 -0.0005 5 6 3.6269 0.7590 -0.0006 6 7 4.7423 1.4780 -0.0004 7 6 5.9310 0.9124 -0.0016 8 6 7.1607 1.7836 -0.0018 9 6 6.0778 -0.4650 -0.0021 10 6 4.9488 -1.2663 -0.0020 11 6 3.7032 -0.6437 -0.0018 12 6 2.3110 -1.1326 -0.0058 13 6 1.8840 -2.4752 -0.0140 14 1 0.9611 -2.7513 0.4743 15 6 2.6549 -3.4498 -0.6538 16 7 3.5507 -3.0971 -1.5428 17 14 2.4082 -5.2549 -0.2418 18 1 1.0088 -5.6458 -0.5485 19 1 3.3408 -6.0794 -1.0515 20 1 2.6783 -5.4745 1.2019 21 1 -0.3634 -0.0935 -1.0235 22 1 -0.3634 -0.8396 0.5926 23 1 -0.3635 0.9330 0.4307 24 1 7.4566 1.9940 -1.0296 25 1 6.9428 2.7196 0.5124 26 1 7.9719 1.2673 0.5114 27 1 7.0623 -0.9090 -0.0027 28 1 5.0317 -2.3432 -0.0028 29 1 4.1126 -3.7698 -1.9582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:26 Heat of formation + Delta-G solvation = 49.351959 kcal Electronic energy + Delta-G solvation = -14021.405710 eV Core-core repulsion = 11716.252619 eV Total energy + Delta-G solvation = -2305.153090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00777 -36.90620 -33.73052 -31.30942 -31.06433 -29.39647 -28.27364 -25.61243 -23.71319 -21.81782 -20.28289 -19.01939 -16.95013 -16.25944 -14.93094 -14.68790 -14.43846 -14.02485 -13.26316 -12.96249 -12.62697 -12.00735 -11.99718 -11.91441 -11.73790 -11.54511 -11.31313 -11.07250 -10.75008 -10.33698 -10.18661 -10.01329 -9.05240 -8.82324 -8.23569 -7.10598 -6.78502 -6.39758 -4.06870 2.26874 2.56156 3.09062 3.16045 3.19633 3.98527 4.05050 4.11924 4.95077 5.37503 5.43052 5.71320 5.98430 6.08700 6.12050 6.16776 6.25420 6.42102 6.49637 6.53603 6.65874 6.86382 6.98110 7.15195 7.31289 7.51754 7.71024 8.02194 8.21238 8.57922 8.61496 9.00084 9.06955 9.27253 10.43170 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.012076 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.063475 B = 2318.040742 C = 3210.919295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.120 4.120 3 N -0.571 5.571 4 H 0.394 0.606 5 C 0.276 3.724 6 N -0.529 5.529 7 C 0.141 3.859 8 C -0.090 4.090 9 C -0.251 4.251 10 C 0.023 3.977 11 C -0.143 4.143 12 C 0.082 3.918 13 C -0.457 4.457 14 H 0.076 0.924 15 C 0.080 3.920 16 N -0.810 5.810 17 Si 0.898 3.102 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 2.698 2.071 3.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.223 4.223 3 N -0.178 5.178 4 H 0.228 0.772 5 C 0.041 3.959 6 N -0.245 5.245 7 C -0.005 4.005 8 C -0.147 4.147 9 C -0.274 4.274 10 C -0.003 4.003 11 C -0.151 4.151 12 C 0.076 3.924 13 C -0.489 4.489 14 H 0.094 0.906 15 C -0.135 4.135 16 N -0.438 5.438 17 Si 0.723 3.277 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.144 0.856 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.782 3.554 1.878 4.397 hybrid contribution -0.073 -1.354 -0.001 1.356 sum 1.709 2.200 1.877 3.359 Atomic orbital electron populations 1.19761 0.89450 1.00119 1.00600 1.20277 0.91804 0.84861 1.25405 1.40659 1.02157 1.07500 1.67476 0.77160 1.18307 0.84858 0.90503 1.02182 1.66058 0.96582 1.41067 1.20832 1.20440 0.91088 0.91607 0.97374 1.20539 0.93584 0.98785 1.01840 1.21368 0.98554 0.94008 1.13475 1.20958 0.90214 0.99684 0.89427 1.19899 0.95240 0.92194 1.07803 1.17734 0.87329 0.91775 0.95603 1.18507 1.07829 0.90574 1.32015 0.90565 1.25665 0.94439 1.00568 0.92859 1.69972 1.18603 1.36065 1.19192 0.86549 0.78987 0.82731 0.79437 1.19287 1.20648 1.19195 0.93311 0.91677 0.94471 0.91617 0.91681 0.91583 0.86824 0.85610 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.80 10.17 36.00 0.37 -0.43 15 2 C -0.12 -2.85 7.23 -80.61 -0.58 -3.44 15 3 N -0.57 -12.94 5.97 -7.60 -0.05 -12.99 15 4 H 0.39 7.56 8.96 -40.82 -0.37 7.19 15 5 C 0.28 6.88 8.39 -155.33 -1.30 5.58 15 6 N -0.53 -12.35 10.29 -8.49 -0.09 -12.44 15 7 C 0.14 2.95 6.77 -82.57 -0.56 2.39 15 8 C -0.09 -1.39 10.15 36.01 0.37 -1.02 15 9 C -0.25 -5.34 9.72 -39.40 -0.38 -5.72 15 10 C 0.02 0.56 8.87 -39.13 -0.35 0.21 15 11 C -0.14 -3.76 5.78 -104.88 -0.61 -4.37 15 12 C 0.08 2.19 5.71 -104.85 -0.60 1.59 15 13 C -0.46 -12.07 8.97 -38.01 -0.34 -12.41 15 14 H 0.08 1.92 7.66 -52.49 -0.40 1.52 15 15 C 0.08 2.01 4.94 -17.32 -0.09 1.93 15 16 N -0.81 -21.24 10.39 55.54 0.58 -20.67 15 17 Si 0.90 18.92 29.60 -169.99 -5.03 13.88 15 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 21 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 22 H 0.06 1.22 7.81 -51.93 -0.41 0.81 15 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.07 0.86 8.07 -51.93 -0.42 0.44 15 27 H 0.11 2.04 8.06 -52.49 -0.42 1.61 15 28 H 0.13 3.09 6.49 -52.48 -0.34 2.75 15 29 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 LS Contribution 252.19 15.07 3.80 3.80 Total: -1.00 -29.46 252.19 -8.04 -37.51 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.18 Total: 6.59 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -4.08 Total: -15.69 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.44 Total: -46.09 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.46 -8.04 -37.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.857 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds