Wall clock time and date at job start Mon Mar 30 2020 20:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35761 * 125.37069 * 2 1 4 4 H 0.96998 * 124.62960 * 359.96320 * 3 2 1 5 5 C 1.37878 * 110.74918 * 180.02562 * 3 2 1 6 6 N 1.32711 * 132.57014 * 180.02562 * 5 3 2 7 7 C 1.31636 * 121.74235 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.23437 * 179.97438 * 7 6 5 9 9 C 1.38518 * 121.53342 * 359.95302 * 7 6 5 10 10 C 1.38446 * 119.28248 * 0.02562 * 9 7 6 11 11 C 1.39252 * 118.07346 * 0.02562 * 10 9 7 12 12 C 1.38899 * 125.37196 * 180.29460 * 2 1 3 13 13 C 1.40890 * 126.98660 * 0.06259 * 12 2 1 14 14 H 1.08001 * 119.99920 * 328.35948 * 13 12 2 15 15 C 1.39766 * 119.99750 * 148.36197 * 13 12 2 16 16 N 1.31033 * 119.99840 * 341.12722 * 15 13 12 17 17 Si 1.86799 * 119.99927 * 161.12483 * 15 13 12 18 18 H 1.48500 * 109.46742 * 59.99803 * 17 15 13 19 19 H 1.48498 * 109.47085 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47053 * 300.00357 * 17 15 13 21 21 H 1.09007 * 109.47112 * 95.21860 * 1 2 3 22 22 H 1.09002 * 109.47486 * 215.21696 * 1 2 3 23 23 H 1.09003 * 109.47728 * 335.21882 * 1 2 3 24 24 H 1.09001 * 109.47012 * 269.97704 * 8 7 6 25 25 H 1.09000 * 109.46902 * 29.97655 * 8 7 6 26 26 H 1.09002 * 109.47420 * 149.98002 * 8 7 6 27 27 H 1.08001 * 120.35694 * 180.02562 * 9 7 6 28 28 H 1.08003 * 120.96251 * 179.97438 * 10 9 7 29 29 H 0.96998 * 119.99706 * 177.30094 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2928 1.1070 0.0000 4 1 1.9610 2.0185 -0.0005 5 6 3.6269 0.7590 -0.0006 6 7 4.7423 1.4780 -0.0004 7 6 5.9310 0.9124 -0.0016 8 6 7.1607 1.7836 -0.0018 9 6 6.0778 -0.4650 -0.0021 10 6 4.9488 -1.2663 -0.0020 11 6 3.7032 -0.6437 -0.0018 12 6 2.3110 -1.1326 -0.0058 13 6 1.8840 -2.4752 -0.0140 14 1 0.9611 -2.7513 0.4743 15 6 2.6549 -3.4498 -0.6538 16 7 3.5507 -3.0971 -1.5428 17 14 2.4082 -5.2549 -0.2418 18 1 1.0088 -5.6458 -0.5485 19 1 3.3408 -6.0794 -1.0515 20 1 2.6783 -5.4745 1.2019 21 1 -0.3634 -0.0935 -1.0235 22 1 -0.3634 -0.8396 0.5926 23 1 -0.3635 0.9330 0.4307 24 1 7.4566 1.9940 -1.0296 25 1 6.9428 2.7196 0.5124 26 1 7.9719 1.2673 0.5114 27 1 7.0623 -0.9090 -0.0027 28 1 5.0317 -2.3432 -0.0028 29 1 4.1126 -3.7698 -1.9582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:26 Heat of formation + Delta-G solvation = 32.182342 kcal Electronic energy + Delta-G solvation = -14022.150240 eV Core-core repulsion = 11716.252619 eV Total energy + Delta-G solvation = -2305.897621 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.79523 -38.63847 -35.59034 -33.07734 -32.68688 -31.17853 -29.86717 -27.38966 -25.40390 -23.60537 -22.04281 -20.83027 -18.74466 -18.14625 -16.68687 -16.45425 -16.13618 -15.75190 -14.92520 -14.43626 -14.34836 -13.80104 -13.57699 -13.38618 -13.34176 -13.08330 -12.93094 -12.69847 -12.43624 -11.96080 -11.90098 -11.84189 -10.89679 -10.67142 -10.02546 -8.88834 -8.65165 -8.24723 -5.99450 0.48078 0.78121 1.40874 1.44876 1.54111 2.16175 2.30231 2.37099 3.13829 3.49167 3.89063 4.18058 4.38295 4.47982 4.62066 4.75242 4.85812 4.93007 4.97668 4.98686 5.08713 5.27483 5.28634 5.39426 5.46587 5.73054 5.91788 6.22619 6.31963 6.70640 6.84609 7.15020 7.15605 7.51617 8.59228 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.012076 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.063475 B = 2318.040742 C = 3210.919295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.112 4.112 3 N -0.563 5.563 4 H 0.410 0.590 5 C 0.250 3.750 6 N -0.537 5.537 7 C 0.137 3.863 8 C -0.084 4.084 9 C -0.244 4.244 10 C 0.001 3.999 11 C -0.180 4.180 12 C 0.029 3.971 13 C -0.487 4.487 14 H 0.075 0.925 15 C 0.039 3.961 16 N -0.844 5.844 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.266 1.266 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.114 0.886 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 3.242 2.348 4.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.216 4.216 3 N -0.171 5.171 4 H 0.247 0.753 5 C 0.017 3.983 6 N -0.254 5.254 7 C -0.010 4.010 8 C -0.142 4.142 9 C -0.267 4.267 10 C -0.025 4.025 11 C -0.189 4.189 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.093 0.907 15 C -0.172 4.172 16 N -0.473 5.473 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.191 1.191 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.132 0.868 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.488 4.130 2.159 5.283 hybrid contribution -0.238 -1.384 -0.085 1.407 sum 2.250 2.746 2.074 4.111 Atomic orbital electron populations 1.19850 0.86415 1.02020 1.01374 1.20963 0.93732 0.84551 1.22344 1.40656 1.01570 1.08172 1.66723 0.75282 1.18605 0.85999 0.90448 1.03298 1.66243 0.96891 1.41017 1.21258 1.21425 0.92081 0.92489 0.94997 1.20666 0.91603 0.98384 1.03519 1.21791 0.99150 0.94269 1.11475 1.21077 0.91054 0.99613 0.90796 1.20224 0.95886 0.93334 1.09467 1.18201 0.88478 0.92947 0.98068 1.18718 1.08595 0.91445 1.33198 0.90699 1.26406 0.94021 1.04501 0.92287 1.70049 1.19673 1.37364 1.20210 0.85481 0.79084 0.77439 0.78996 1.18661 1.19976 1.19097 0.92622 0.91517 0.91084 0.89862 0.90885 0.88528 0.83215 0.86786 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.45 10.17 71.23 0.72 -0.73 15 2 C -0.11 -5.30 7.23 42.11 0.30 -5.00 15 3 N -0.56 -25.39 5.97 -177.94 -1.06 -26.45 15 4 H 0.41 15.31 8.96 -92.71 -0.83 14.48 15 5 C 0.25 12.54 8.39 133.68 1.12 13.67 15 6 N -0.54 -24.58 10.29 -180.77 -1.86 -26.44 15 7 C 0.14 5.45 6.77 42.66 0.29 5.74 15 8 C -0.08 -2.29 10.15 71.24 0.72 -1.57 15 9 C -0.24 -10.09 9.72 22.39 0.22 -9.88 15 10 C 0.00 0.03 8.87 22.56 0.20 0.23 15 11 C -0.18 -9.75 5.78 -20.03 -0.12 -9.86 15 12 C 0.03 1.61 5.71 -20.01 -0.11 1.50 15 13 C -0.49 -26.50 8.97 23.29 0.21 -26.29 15 14 H 0.07 3.90 7.66 -2.91 -0.02 3.88 15 15 C 0.04 2.03 4.94 85.18 0.42 2.45 15 16 N -0.84 -45.52 10.39 21.81 0.23 -45.29 15 17 Si 0.97 39.53 29.60 68.60 2.03 41.56 15 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 20 H -0.27 -10.70 7.11 99.48 0.71 -10.00 15 21 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 22 H 0.07 2.45 7.81 -2.39 -0.02 2.44 15 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.10 2.06 8.07 -2.39 -0.02 2.04 15 27 H 0.15 4.94 8.06 -2.91 -0.02 4.92 15 28 H 0.11 5.81 6.49 -2.91 -0.02 5.79 15 29 H 0.28 13.85 8.30 -92.71 -0.77 13.08 15 Total: -1.00 -65.14 252.19 3.65 -61.49 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.34 Total: 24.87 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.98 Total: -29.74 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -2.70 Total: -98.18 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -65.14 3.65 -61.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.669 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds