Wall clock time and date at job start Mon Mar 30 2020 20:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.50692 * 109.47367 * 239.99897 * 2 1 3 5 5 H 1.08007 * 119.99720 * 240.00169 * 4 2 1 6 6 C 1.37874 * 120.00416 * 60.00119 * 4 2 1 7 7 N 1.31518 * 119.99848 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00360 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47292 * 59.99548 * 8 6 4 10 10 H 1.48494 * 109.47231 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46838 * 299.99788 * 8 6 4 12 12 C 1.50701 * 109.46979 * 119.99649 * 2 1 3 13 13 C 1.40465 * 120.15248 * 60.00076 * 12 2 1 14 14 C 1.34954 * 120.29754 * 180.02562 * 13 12 2 15 15 N 1.36488 * 120.61322 * 359.97438 * 14 13 12 16 16 C 1.36833 * 132.56895 * 179.97438 * 15 14 13 17 17 C 1.35105 * 107.17888 * 180.02562 * 16 15 14 18 18 N 1.33519 * 108.62405 * 0.26846 * 17 16 15 19 19 C 1.32553 * 109.15715 * 359.56153 * 18 17 16 20 20 C 1.36030 * 120.15173 * 239.98086 * 12 2 1 21 21 H 1.09001 * 109.47038 * 59.99856 * 1 2 3 22 22 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47598 * 300.00902 * 1 2 3 24 24 H 0.96992 * 120.00211 * 180.02562 * 7 6 4 25 25 H 1.07999 * 119.85496 * 359.97438 * 13 12 2 26 26 H 1.08004 * 119.69467 * 179.97438 * 14 13 12 27 27 H 1.08004 * 126.41207 * 0.04444 * 16 15 14 28 28 H 1.08002 * 125.68430 * 179.97438 * 17 16 15 29 29 H 1.07995 * 120.33602 * 0.04316 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8261 -2.5204 -4.0076 10 1 1.8262 -0.4208 -5.2204 11 1 3.8066 -1.1210 -4.0080 12 6 2.0323 -0.7103 1.2305 13 6 1.6949 -2.0551 1.4561 14 6 2.1427 -2.6939 2.5573 15 7 2.9282 -2.0455 3.4658 16 6 3.5059 -2.4432 4.6407 17 6 4.1821 -1.3818 5.1322 18 7 4.0273 -0.3529 4.2954 19 6 3.2745 -0.7333 3.2729 20 6 2.8148 -0.0523 2.1277 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 0.7083 1.1607 -3.4844 25 1 1.0737 -2.5800 0.7455 26 1 1.8770 -3.7278 2.7212 27 1 3.4350 -3.4224 5.0908 28 1 4.7490 -1.3666 6.0513 29 1 3.0802 0.9818 1.9648 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279115.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:28 Heat of formation + Delta-G solvation = 79.073526 kcal Electronic energy + Delta-G solvation = -13790.931752 eV Core-core repulsion = 11487.067485 eV Total energy + Delta-G solvation = -2303.864267 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.28629 -37.45127 -34.48605 -32.70448 -30.55194 -29.50154 -27.62787 -25.23102 -23.16228 -22.67230 -21.35077 -19.70840 -17.42596 -16.57481 -15.68481 -15.36119 -15.20772 -14.41371 -13.95929 -13.56294 -13.27657 -12.69676 -12.14748 -11.70536 -11.40367 -11.31816 -11.01601 -10.95436 -10.56585 -10.22212 -9.95571 -9.74649 -9.63994 -9.03649 -8.46717 -8.35690 -7.25230 -6.10325 -4.18651 1.33655 1.83815 3.06065 3.25704 3.27876 3.31379 3.33993 4.11709 4.36568 4.73724 4.86884 5.10333 5.21293 5.50185 5.63655 5.78732 5.84221 6.11527 6.43187 6.59083 6.70708 6.85021 6.94652 7.01107 7.10184 7.19559 7.51723 7.59726 7.81102 7.97610 8.24547 8.30801 8.83023 9.46812 10.95126 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.049364 B = 0.007455 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.077962 B = 3754.936727 C = 3858.988140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.042 0.958 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C -0.009 4.009 13 C -0.105 4.105 14 C 0.025 3.975 15 N -0.363 5.363 16 C -0.126 4.126 17 C 0.024 3.976 18 N -0.516 5.516 19 C 0.242 3.758 20 C -0.119 4.119 21 H 0.089 0.911 22 H 0.029 0.971 23 H 0.011 0.989 24 H 0.263 0.737 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -6.618 8.801 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.015 4.015 13 C -0.126 4.126 14 C -0.096 4.096 15 N -0.034 5.034 16 C -0.257 4.257 17 C -0.128 4.128 18 N -0.236 5.236 19 C -0.001 4.001 20 C -0.139 4.139 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.170 0.830 26 H 0.173 0.827 27 H 0.190 0.810 28 H 0.189 0.811 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.055 -5.786 8.819 10.600 hybrid contribution 0.044 -1.455 -0.878 1.700 sum 1.099 -7.241 7.940 10.802 Atomic orbital electron populations 1.21792 0.97198 0.99418 1.00670 1.17922 0.93096 0.95728 0.87745 0.94018 1.20977 1.31756 1.12720 0.89706 0.92454 1.24936 0.94869 0.94927 0.98956 1.69862 1.36206 1.22662 1.23781 0.86613 0.79318 0.79699 0.82144 1.20218 1.21205 1.20195 1.20639 0.92005 0.93065 0.95778 1.20970 1.00379 0.95629 0.95594 1.21533 0.97912 0.98734 0.91468 1.42796 1.32536 1.12045 1.16065 1.22416 1.09614 1.02700 0.91002 1.22346 1.01307 0.89031 1.00153 1.70729 1.20138 1.29261 1.03481 1.21108 0.99216 0.82167 0.97654 1.20188 1.01478 1.01029 0.91248 0.89278 0.95178 0.97033 0.92694 0.82977 0.82744 0.81010 0.81084 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.79 37.16 0.33 -2.66 15 2 C 0.07 1.73 2.48 -92.93 -0.23 1.50 15 3 H 0.04 1.06 7.87 -51.93 -0.41 0.65 15 4 C -0.51 -13.18 8.26 -34.45 -0.28 -13.46 15 5 H 0.06 1.46 7.61 -52.48 -0.40 1.06 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 15 8 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 15 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 12 C -0.01 -0.18 4.72 -104.58 -0.49 -0.67 15 13 C -0.11 -1.86 8.71 -39.91 -0.35 -2.21 15 14 C 0.03 0.39 10.95 -16.65 -0.18 0.21 15 15 N -0.36 -6.26 2.94 -62.66 -0.18 -6.45 15 16 C -0.13 -1.86 11.76 -16.43 -0.19 -2.05 15 17 C 0.02 0.37 11.83 -17.93 -0.21 0.16 15 18 N -0.52 -10.06 11.32 -12.78 -0.14 -10.21 15 19 C 0.24 4.79 7.81 -156.05 -1.22 3.57 15 20 C -0.12 -2.41 9.72 -39.35 -0.38 -2.80 15 21 H 0.09 2.22 6.07 -51.93 -0.32 1.90 15 22 H 0.03 0.62 7.42 -51.93 -0.39 0.24 15 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 25 H 0.15 2.53 7.62 -52.49 -0.40 2.13 15 26 H 0.16 1.77 8.06 -52.48 -0.42 1.34 15 27 H 0.17 1.82 8.06 -52.48 -0.42 1.39 15 28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 15 29 H 0.14 2.82 7.94 -52.49 -0.42 2.41 15 LS Contribution 251.91 15.07 3.80 3.80 Total: -1.00 -29.18 251.91 -7.39 -36.57 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.15 Total: 1.19 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.31 Total: -16.80 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.30 Total: -40.12 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.18 -7.39 -36.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279115.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.644 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds