Wall clock time and date at job start Mon Mar 30 2020 20:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38520 * 119.22852 * 2 1 4 4 C 1.38442 * 119.28056 * 180.02562 * 3 2 1 5 5 C 1.39258 * 118.07645 * 0.02562 * 4 3 2 6 6 C 1.47566 * 134.09899 * 179.97438 * 5 4 3 7 7 C 1.40895 * 126.98711 * 359.75992 * 6 5 4 8 8 H 1.07999 * 119.99792 * 0.02562 * 7 6 5 9 9 C 1.39762 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.31031 * 119.99658 * 359.97438 * 9 7 6 11 11 Si 1.86789 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47305 * 90.00391 * 11 9 7 13 13 H 1.48507 * 109.47208 * 209.99927 * 11 9 7 14 14 H 1.48500 * 109.47553 * 329.99862 * 11 9 7 15 15 C 1.38894 * 106.02299 * 180.02562 * 6 5 4 16 16 N 1.35760 * 109.25553 * 0.02562 * 15 6 5 17 17 C 1.46503 * 124.62276 * 179.97438 * 16 15 6 18 18 C 1.37876 * 110.75102 * 359.97438 * 16 15 6 19 19 N 1.31641 * 119.23570 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47187 * 90.00293 * 1 2 3 21 21 H 1.09001 * 109.46917 * 210.00146 * 1 2 3 22 22 H 1.08997 * 109.47854 * 330.00113 * 1 2 3 23 23 H 1.07996 * 120.35948 * 0.04293 * 3 2 1 24 24 H 1.08007 * 120.96117 * 179.97438 * 4 3 2 25 25 H 0.97001 * 120.00018 * 179.97438 * 10 9 7 26 26 H 1.08002 * 125.36809 * 179.97438 * 15 6 5 27 27 H 1.09002 * 109.47596 * 270.04500 * 17 16 15 28 28 H 1.09006 * 109.47269 * 30.04315 * 17 16 15 29 29 H 1.08998 * 109.46934 * 150.04143 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.2088 0.0000 4 6 3.5678 1.2101 -0.0005 5 6 4.2243 -0.0180 -0.0016 6 6 5.6430 -0.4240 -0.0029 7 6 6.7676 0.4247 -0.0081 8 1 6.6352 1.4966 -0.0113 9 6 8.0545 -0.1204 -0.0081 10 7 8.2151 -1.4208 -0.0028 11 14 9.5454 1.0048 -0.0158 12 1 9.9432 1.3090 1.3823 13 1 10.6698 0.3321 -0.7150 14 1 9.2089 2.2678 -0.7207 15 6 5.6443 -1.8130 -0.0041 16 7 4.3630 -2.2619 -0.0043 17 6 3.9761 -3.6749 -0.0060 18 6 3.4757 -1.2066 -0.0026 19 7 2.1499 -1.1487 -0.0005 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3635 0.8899 0.5138 23 1 1.6367 2.1402 0.0007 24 1 4.1226 2.1368 -0.0010 25 1 9.1083 -1.7993 -0.0032 26 1 6.5256 -2.4373 -0.0057 27 1 3.8805 -4.0243 -1.0340 28 1 4.7383 -4.2610 0.5075 29 1 3.0216 -3.7908 0.5074 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280493.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:32 Heat of formation + Delta-G solvation = 41.360726 kcal Electronic energy + Delta-G solvation = -13843.591943 eV Core-core repulsion = 11538.092326 eV Total energy + Delta-G solvation = -2305.499616 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81306 -38.67652 -35.71763 -33.83410 -32.23980 -31.37113 -28.82072 -27.08463 -25.85460 -23.36754 -22.06209 -21.21176 -18.86964 -17.48486 -17.24111 -16.35617 -16.18395 -15.89649 -14.93256 -14.68443 -14.47238 -13.97893 -13.48727 -13.39368 -13.21213 -13.02545 -12.93362 -12.80421 -12.64965 -11.89746 -11.88400 -11.70339 -11.26246 -10.73007 -10.06305 -8.90034 -8.63134 -8.43920 -6.04762 0.45015 0.72232 1.40381 1.42725 1.55864 2.18057 2.24956 2.32244 3.07793 3.56483 3.68182 4.08287 4.15994 4.42161 4.49111 4.53699 4.62576 4.66863 4.92128 4.95315 4.99441 5.08372 5.24000 5.34610 5.56346 5.68962 5.84361 6.08780 6.44447 6.55494 6.94665 7.08566 7.15022 7.45515 8.54563 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.009179 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.268413 B = 3049.662602 C = 3744.479354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.134 3.866 3 C -0.229 4.229 4 C -0.033 4.033 5 C -0.217 4.217 6 C -0.013 4.013 7 C -0.452 4.452 8 H 0.070 0.930 9 C 0.014 3.986 10 N -0.855 5.855 11 Si 0.992 3.008 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.262 1.262 15 C -0.105 4.105 16 N -0.472 5.472 17 C 0.089 3.911 18 C 0.249 3.751 19 N -0.531 5.531 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.099 0.901 23 H 0.162 0.838 24 H 0.130 0.870 25 H 0.282 0.718 26 H 0.187 0.813 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 1.542 0.065 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 C -0.251 4.251 4 C -0.059 4.059 5 C -0.226 4.226 6 C -0.018 4.018 7 C -0.484 4.484 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.485 5.485 11 Si 0.814 3.186 12 H -0.192 1.192 13 H -0.195 1.195 14 H -0.186 1.186 15 C -0.228 4.228 16 N -0.160 5.160 17 C -0.052 4.052 18 C 0.015 3.985 19 N -0.248 5.248 20 H 0.104 0.896 21 H 0.087 0.913 22 H 0.118 0.882 23 H 0.180 0.820 24 H 0.148 0.852 25 H 0.092 0.908 26 H 0.203 0.797 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.701 0.187 0.063 7.704 hybrid contribution 1.462 0.824 -0.025 1.679 sum -6.239 1.011 0.038 6.320 Atomic orbital electron populations 1.20679 0.85920 1.04003 1.03640 1.21556 0.97917 0.86992 0.94876 1.21755 0.93319 0.99752 1.10324 1.21072 0.94784 0.96003 0.94057 1.20430 0.95790 0.94413 1.11951 1.18483 0.89731 0.92357 1.01270 1.18989 0.90352 0.93814 1.45271 0.91189 1.26558 1.02736 0.96907 0.93182 1.69489 1.24827 1.12910 1.41319 0.85031 0.76234 0.78360 0.78997 1.19227 1.19528 1.18637 1.23233 0.84021 0.95618 1.19912 1.43540 1.04430 1.04948 1.63041 1.21851 1.01929 0.78813 1.02634 1.18643 0.88450 0.87649 1.03720 1.66245 1.06443 1.31570 1.20567 0.89636 0.91255 0.88248 0.82004 0.85201 0.90755 0.79650 0.91673 0.89445 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 10.15 71.23 0.72 -1.36 15 2 C 0.13 4.93 6.77 42.65 0.29 5.22 15 3 C -0.23 -8.22 9.72 22.39 0.22 -8.00 15 4 C -0.03 -1.46 10.21 22.56 0.23 -1.23 15 5 C -0.22 -11.40 6.35 -20.03 -0.13 -11.53 15 6 C -0.01 -0.73 6.10 -20.01 -0.12 -0.85 15 7 C -0.45 -25.45 9.42 23.29 0.22 -25.23 15 8 H 0.07 3.78 7.84 -2.91 -0.02 3.76 15 9 C 0.01 0.74 5.49 85.18 0.47 1.20 15 10 N -0.85 -45.48 10.34 21.80 0.23 -45.26 15 11 Si 0.99 40.04 29.56 68.60 2.03 42.06 15 12 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 13 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 14 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 15 C -0.10 -5.76 10.32 84.24 0.87 -4.89 15 16 N -0.47 -23.19 3.14 -541.73 -1.70 -24.89 15 17 C 0.09 3.30 11.04 127.77 1.41 4.71 15 18 C 0.25 12.52 7.85 133.68 1.05 13.57 15 19 N -0.53 -23.64 10.29 -180.78 -1.86 -25.50 15 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.10 1.82 8.07 -2.39 -0.02 1.80 15 23 H 0.16 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.13 5.20 8.06 -2.91 -0.02 5.18 15 25 H 0.28 13.62 8.30 -92.71 -0.77 12.85 15 26 H 0.19 10.39 5.69 -2.91 -0.02 10.37 15 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.09 2.88 8.13 -2.38 -0.02 2.86 15 29 H 0.08 2.72 8.13 -2.39 -0.02 2.70 15 Total: -1.00 -66.67 254.78 5.07 -61.60 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.15 Total: 20.36 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 5.23 Total: -28.38 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -3.34 Total: -95.64 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -66.67 5.07 -61.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280493.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.961 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds