Wall clock time and date at job start Mon Mar 30 2020 20:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 Cl 1.80295 * 109.47384 * 180.02562 * 14 12 11 16 16 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 17 17 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 18 18 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 19 19 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 20 20 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 21 21 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 22 22 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 23 23 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 24 24 H 1.09003 * 117.50034 * 359.97438 * 16 9 7 25 25 H 1.09002 * 117.49971 * 145.02730 * 16 9 7 26 26 H 1.08996 * 117.49810 * 214.97781 * 17 9 7 27 27 H 1.08995 * 117.50078 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 17 2.9814 -4.7317 5.8668 16 6 1.5730 -3.5803 -0.9273 17 6 0.2453 -2.8218 -0.9979 18 1 -0.4850 0.8369 -0.0732 19 1 0.3749 -2.1616 2.0428 20 1 0.3013 -3.8500 1.4840 21 1 3.0162 -3.0718 1.8342 22 1 3.9646 -4.7900 3.6810 23 1 3.9580 -3.1439 4.3583 24 1 2.3246 -3.3504 -1.6826 25 1 1.5428 -4.6177 -0.5940 26 1 -0.6578 -3.3605 -0.7110 27 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404074072.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:02 Heat of formation + Delta-G solvation = -49.497230 kcal Electronic energy + Delta-G solvation = -12591.911877 eV Core-core repulsion = 10182.320853 eV Total energy + Delta-G solvation = -2409.591025 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60218 -38.47422 -36.89783 -35.01276 -33.94945 -30.67289 -27.83543 -26.63121 -22.94600 -21.48905 -21.12296 -18.45757 -17.83048 -16.83179 -16.76045 -16.47629 -15.58978 -14.95405 -14.51115 -14.35236 -14.31331 -13.53806 -13.38724 -12.92640 -12.77709 -12.38296 -12.01477 -11.84610 -11.45232 -11.42686 -10.95785 -10.92413 -10.43151 -10.05854 -9.87076 -8.08258 -6.22971 1.08465 1.45451 1.47030 1.53077 1.61333 2.35768 2.44509 3.19984 3.48014 3.80936 4.15580 4.25273 4.26535 4.55581 4.65776 4.73460 4.99861 5.03360 5.29815 5.54592 5.57605 5.70048 5.79166 6.36951 6.67341 6.85534 7.29889 7.47510 8.98456 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.007997 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.577351 B = 3500.528177 C = 3983.525731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.002 3.998 10 C 0.180 3.820 11 N -0.694 5.694 12 C 0.488 3.512 13 O -0.582 6.582 14 C -0.048 4.048 15 Cl -0.162 7.162 16 C -0.175 4.175 17 C -0.157 4.157 18 H 0.258 0.742 19 H 0.026 0.974 20 H 0.039 0.961 21 H 0.415 0.585 22 H 0.158 0.842 23 H 0.150 0.850 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -6.343 3.916 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.542 4.542 8 H 0.086 0.914 9 C 0.001 3.999 10 C 0.055 3.945 11 N -0.345 5.345 12 C 0.275 3.725 13 O -0.462 6.462 14 C -0.113 4.113 15 Cl -0.135 7.135 16 C -0.212 4.212 17 C -0.195 4.195 18 H 0.067 0.933 19 H 0.045 0.955 20 H 0.057 0.943 21 H 0.252 0.748 22 H 0.176 0.824 23 H 0.168 0.832 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.358 -6.414 4.457 11.439 hybrid contribution 0.136 1.214 -0.286 1.255 sum 8.494 -5.199 4.171 10.797 Atomic orbital electron populations 1.70110 1.07353 1.27358 1.49838 1.25719 0.95431 1.02149 0.94414 0.85743 0.78343 0.79358 0.78944 1.19470 1.22117 1.19403 1.20655 0.93087 0.89359 1.51083 0.91408 1.19092 1.00221 0.94075 0.86530 1.20571 0.85076 0.96377 0.92434 1.45771 1.10930 1.62725 1.15031 1.21121 0.91807 0.77527 0.82087 1.90727 1.32634 1.54528 1.68307 1.24378 0.95595 1.06202 0.85106 1.98725 1.95783 1.87792 1.31243 1.23008 0.98732 0.95910 1.03526 1.22390 0.92210 1.01915 1.02984 0.93278 0.95529 0.94319 0.74829 0.82397 0.83180 0.89561 0.89261 0.91436 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.43 12.65 21.45 0.27 -50.16 15 2 C 0.02 1.21 5.43 84.65 0.46 1.67 15 3 Si 0.95 40.84 29.54 68.60 2.03 42.87 15 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 15 6 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 7 C -0.50 -24.53 8.59 25.60 0.22 -24.31 15 8 H 0.07 3.12 7.82 -2.91 -0.02 3.10 15 9 C 0.00 0.07 1.47 -52.93 -0.08 -0.01 15 10 C 0.18 7.82 5.50 86.38 0.48 8.29 15 11 N -0.69 -23.80 5.48 -463.07 -2.54 -26.34 15 12 C 0.49 16.15 7.87 87.66 0.69 16.84 15 13 O -0.58 -24.94 16.01 -3.02 -0.05 -24.98 15 14 C -0.05 -1.01 7.14 71.24 0.51 -0.50 15 15 Cl -0.16 -4.24 28.37 -2.72 -0.08 -4.31 15 16 C -0.17 -6.62 9.96 30.62 0.30 -6.31 15 17 C -0.16 -7.00 9.14 30.62 0.28 -6.72 15 18 H 0.26 13.93 8.32 -92.71 -0.77 13.16 15 19 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.04 1.68 8.09 -2.38 -0.02 1.66 15 21 H 0.42 12.00 8.33 -92.71 -0.77 11.23 15 22 H 0.16 2.13 8.14 -2.38 -0.02 2.11 15 23 H 0.15 2.34 8.14 -2.38 -0.02 2.32 15 24 H 0.09 3.15 8.14 -2.39 -0.02 3.13 15 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 27 H 0.06 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -63.06 258.03 2.89 -60.16 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.40 Total: 13.80 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 2.86 Total: -11.04 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.27 Total: -76.49 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -0.08 Total: -4.31 kcal Total: -63.06 2.89 -60.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074072.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.666 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds