Wall clock time and date at job start Mon Mar 30 2020 20:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99670 * 2 1 4 4 C 1.50694 * 120.00206 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47846 * 94.99279 * 4 2 1 6 6 C 1.38856 * 120.00469 * 179.97438 * 5 4 2 7 7 C 1.39564 * 119.83805 * 359.72843 * 6 5 4 8 8 C 1.36344 * 120.15889 * 179.72127 * 7 6 5 9 9 C 1.40890 * 119.83562 * 0.54827 * 8 7 6 10 10 C 1.41130 * 120.15796 * 179.70390 * 9 8 7 11 11 H 1.08002 * 119.99890 * 204.63732 * 10 9 8 12 12 C 1.39868 * 120.00093 * 24.62666 * 10 9 8 13 13 N 1.30900 * 119.99549 * 17.96371 * 12 10 9 14 14 Si 1.86800 * 120.00249 * 197.95588 * 12 10 9 15 15 H 1.48506 * 109.46918 * 60.00132 * 14 12 10 16 16 H 1.48494 * 109.47059 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47045 * 300.00576 * 14 12 10 18 18 C 1.40890 * 119.68649 * 359.72642 * 9 8 7 19 19 C 1.36339 * 119.83897 * 359.97438 * 18 9 8 20 20 H 1.07994 * 120.00434 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.00055 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47653 * 240.00420 * 3 2 1 23 23 H 1.08996 * 109.47216 * 0.02562 * 3 2 1 24 24 H 1.09011 * 109.47001 * 120.00571 * 3 2 1 25 25 H 1.09003 * 109.47046 * 334.99267 * 4 2 1 26 26 H 1.09004 * 109.47116 * 214.99510 * 4 2 1 27 27 H 0.97004 * 119.99357 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.92350 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.08326 * 180.27560 * 8 7 6 30 30 H 0.97000 * 119.99705 * 180.02562 * 13 12 10 31 31 H 1.08004 * 120.07951 * 179.97438 * 18 9 8 32 32 H 1.07997 * 119.91946 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4118 -1.6673 -1.3766 6 6 3.1141 -2.8382 -1.6298 7 6 3.4913 -3.6646 -0.5703 8 6 4.1760 -4.8186 -0.8119 9 6 4.5127 -5.1702 -2.1340 10 6 5.2268 -6.3600 -2.3913 11 1 5.8213 -6.4497 -3.2885 12 6 5.1648 -7.4229 -1.4843 13 7 4.2014 -7.4728 -0.5994 14 14 6.4565 -8.7714 -1.5357 15 1 7.7989 -8.1800 -1.3041 16 1 6.1677 -9.7740 -0.4791 17 1 6.4295 -9.4322 -2.8654 18 6 4.1336 -4.3281 -3.1980 19 6 3.4438 -3.1803 -2.9421 20 1 -0.5400 0.9352 0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 2.6900 1.3630 -0.8900 23 1 1.3551 2.1336 0.0005 24 1 2.6902 1.3628 0.8900 25 1 1.4386 -2.0856 0.4335 26 1 2.9743 -1.1990 0.5889 27 1 2.1525 -1.0889 -2.1109 28 1 3.2367 -3.3914 0.4431 29 1 4.4634 -5.4594 0.0086 30 1 4.1586 -8.2097 0.0298 31 1 4.3887 -4.5913 -4.2140 32 1 3.1529 -2.5337 -3.7567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051753680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:25 Heat of formation + Delta-G solvation = 32.075950 kcal Electronic energy + Delta-G solvation = -13652.090376 eV Core-core repulsion = 11384.302574 eV Total energy + Delta-G solvation = -2267.787802 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.08495 -36.38937 -34.04435 -32.39779 -29.43217 -28.74431 -27.30050 -25.82894 -23.74899 -21.13260 -20.03119 -18.41049 -17.17577 -16.09239 -15.13566 -14.95417 -14.58406 -13.99706 -13.75302 -13.16368 -12.64985 -12.52810 -12.50469 -12.01136 -11.67027 -11.65274 -11.15159 -10.99788 -10.92657 -10.74446 -10.43566 -9.69412 -9.33821 -9.19669 -9.09739 -8.49639 -7.46502 -6.61526 -6.35736 -4.00556 2.15195 2.95491 3.12875 3.15984 3.19265 3.38747 4.07544 4.56142 4.78994 4.87529 4.98129 5.46836 5.62611 5.79786 5.85057 5.90793 5.96753 6.01579 6.30397 6.35250 6.58661 6.86990 6.96462 6.97101 7.22969 7.38755 7.58405 7.72023 7.87530 8.17828 8.32227 8.52411 8.74120 8.83405 9.08693 9.18289 10.40176 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.062609 B = 0.005718 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.111882 B = 4895.772234 C = 5115.957541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.136 4.136 3 C -0.117 4.117 4 C 0.172 3.828 5 N -0.757 5.757 6 C 0.091 3.909 7 C -0.164 4.164 8 C -0.124 4.124 9 C 0.074 3.926 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.808 5.808 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.187 4.187 19 C -0.159 4.159 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.384 0.616 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.276 0.724 31 H 0.091 0.909 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 9.961 2.190 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.137 4.137 3 C -0.173 4.173 4 C 0.047 3.953 5 N -0.393 5.393 6 C -0.005 4.005 7 C -0.186 4.186 8 C -0.144 4.144 9 C 0.071 3.929 10 C -0.499 4.499 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.436 5.436 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.207 4.207 19 C -0.181 4.181 20 H 0.114 0.886 21 H 0.117 0.883 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.216 0.784 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.649 9.759 2.579 10.733 hybrid contribution 0.335 -0.501 -0.223 0.643 sum -3.314 9.257 2.357 10.111 Atomic orbital electron populations 1.23798 0.95224 1.01822 1.01105 1.21955 0.95537 0.96044 1.00154 1.20853 1.00106 0.93977 1.02408 1.19986 0.97384 0.91845 0.86114 1.43834 1.65830 1.24646 1.04994 1.17374 1.00862 0.88778 0.93531 1.20097 1.05790 0.97255 0.95493 1.20934 1.00954 0.95044 0.97504 1.17492 0.92015 0.92570 0.90814 1.19335 1.26493 0.97921 1.06173 0.90985 1.25790 0.94913 0.98915 0.94389 1.69850 1.27114 1.30420 1.16188 0.86465 0.82004 0.80111 0.78604 1.19089 1.20594 1.19277 1.20544 1.05280 0.97441 0.97432 1.19803 1.05878 0.99253 0.93179 0.88576 0.88275 0.91433 0.92323 0.91589 0.93026 0.93072 0.78367 0.89431 0.86385 0.91286 0.89050 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 13.90 29.02 0.40 -1.68 16 2 C -0.14 -1.72 5.42 -101.07 -0.55 -2.27 16 3 C -0.12 -1.23 10.12 36.00 0.36 -0.87 16 4 C 0.17 2.70 5.05 -5.20 -0.03 2.68 16 5 N -0.76 -13.76 5.69 -59.68 -0.34 -14.10 16 6 C 0.09 2.05 6.67 -83.69 -0.56 1.50 16 7 C -0.16 -3.96 9.23 -39.77 -0.37 -4.32 16 8 C -0.12 -3.33 8.64 -39.26 -0.34 -3.67 16 9 C 0.07 2.04 5.57 -106.79 -0.60 1.44 16 10 C -0.47 -12.91 9.03 -37.88 -0.34 -13.25 16 11 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 12 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 13 N -0.81 -21.77 10.96 55.54 0.61 -21.17 16 14 Si 0.90 19.44 29.60 -169.99 -5.03 14.41 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 19 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 20 H 0.10 0.92 7.83 -52.49 -0.41 0.50 16 21 H 0.10 1.17 7.99 -52.48 -0.42 0.76 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.05 0.86 7.78 -51.93 -0.40 0.45 16 26 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 27 H 0.38 6.33 8.46 -40.82 -0.35 5.99 16 28 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 29 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 30 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -28.34 275.12 -7.79 -36.14 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.31 Total: 8.31 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -2.87 Total: -27.73 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.27 Total: -35.27 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.34 -7.79 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051753680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.212 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds