Wall clock time and date at job start Mon Mar 30 2020 20:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99670 * 2 1 4 4 C 1.50694 * 120.00206 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47846 * 94.99279 * 4 2 1 6 6 C 1.38856 * 120.00469 * 179.97438 * 5 4 2 7 7 C 1.39564 * 119.83805 * 359.72843 * 6 5 4 8 8 C 1.36344 * 120.15889 * 179.72127 * 7 6 5 9 9 C 1.40890 * 119.83562 * 0.54827 * 8 7 6 10 10 C 1.41130 * 120.15796 * 179.70390 * 9 8 7 11 11 H 1.08002 * 119.99890 * 204.63732 * 10 9 8 12 12 C 1.39868 * 120.00093 * 24.62666 * 10 9 8 13 13 N 1.30900 * 119.99549 * 17.96371 * 12 10 9 14 14 Si 1.86800 * 120.00249 * 197.95588 * 12 10 9 15 15 H 1.48506 * 109.46918 * 60.00132 * 14 12 10 16 16 H 1.48494 * 109.47059 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47045 * 300.00576 * 14 12 10 18 18 C 1.40890 * 119.68649 * 359.72642 * 9 8 7 19 19 C 1.36339 * 119.83897 * 359.97438 * 18 9 8 20 20 H 1.07994 * 120.00434 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.00055 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47653 * 240.00420 * 3 2 1 23 23 H 1.08996 * 109.47216 * 0.02562 * 3 2 1 24 24 H 1.09011 * 109.47001 * 120.00571 * 3 2 1 25 25 H 1.09003 * 109.47046 * 334.99267 * 4 2 1 26 26 H 1.09004 * 109.47116 * 214.99510 * 4 2 1 27 27 H 0.97004 * 119.99357 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.92350 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.08326 * 180.27560 * 8 7 6 30 30 H 0.97000 * 119.99705 * 180.02562 * 13 12 10 31 31 H 1.08004 * 120.07951 * 179.97438 * 18 9 8 32 32 H 1.07997 * 119.91946 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4118 -1.6673 -1.3766 6 6 3.1141 -2.8382 -1.6298 7 6 3.4913 -3.6646 -0.5703 8 6 4.1760 -4.8186 -0.8119 9 6 4.5127 -5.1702 -2.1340 10 6 5.2268 -6.3600 -2.3913 11 1 5.8213 -6.4497 -3.2885 12 6 5.1648 -7.4229 -1.4843 13 7 4.2014 -7.4728 -0.5994 14 14 6.4565 -8.7714 -1.5357 15 1 7.7989 -8.1800 -1.3041 16 1 6.1677 -9.7740 -0.4791 17 1 6.4295 -9.4322 -2.8654 18 6 4.1336 -4.3281 -3.1980 19 6 3.4438 -3.1803 -2.9421 20 1 -0.5400 0.9352 0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 2.6900 1.3630 -0.8900 23 1 1.3551 2.1336 0.0005 24 1 2.6902 1.3628 0.8900 25 1 1.4386 -2.0856 0.4335 26 1 2.9743 -1.1990 0.5889 27 1 2.1525 -1.0889 -2.1109 28 1 3.2367 -3.3914 0.4431 29 1 4.4634 -5.4594 0.0086 30 1 4.1586 -8.2097 0.0298 31 1 4.3887 -4.5913 -4.2140 32 1 3.1529 -2.5337 -3.7567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051753680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:24 Heat of formation + Delta-G solvation = 16.523635 kcal Electronic energy + Delta-G solvation = -13652.764775 eV Core-core repulsion = 11384.302574 eV Total energy + Delta-G solvation = -2268.462201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84556 -37.75389 -35.72020 -34.06903 -31.36271 -30.54209 -28.18895 -27.37655 -25.50414 -23.00887 -21.87082 -19.53470 -19.15286 -17.72792 -16.82778 -16.51406 -15.80607 -15.62982 -15.13015 -14.55612 -14.37303 -13.94096 -13.86372 -13.78900 -13.46341 -12.93774 -12.73114 -12.57485 -12.49856 -12.25147 -11.90348 -11.59066 -11.20901 -11.06508 -10.31003 -10.11278 -9.41828 -8.55161 -8.17911 -6.01236 1.10677 1.17993 1.18451 1.40480 1.51610 1.60222 2.27770 2.84206 3.09873 3.83952 3.85343 4.03287 4.43050 4.49543 4.56956 4.71209 4.81996 4.85029 4.97094 5.03362 5.13155 5.14697 5.27202 5.44970 5.63476 5.68345 5.79613 5.92306 5.95972 6.18252 6.38220 6.66005 6.85654 7.07987 7.13626 7.30821 8.48338 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.062609 B = 0.005718 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.111882 B = 4895.772234 C = 5115.957541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.150 4.150 3 C -0.113 4.113 4 C 0.168 3.832 5 N -0.746 5.746 6 C 0.108 3.892 7 C -0.175 4.175 8 C -0.144 4.144 9 C 0.035 3.965 10 C -0.507 4.507 11 H 0.069 0.931 12 C 0.032 3.968 13 N -0.843 5.843 14 Si 0.978 3.022 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.195 4.195 19 C -0.165 4.165 20 H 0.123 0.877 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.396 0.604 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.282 0.718 31 H 0.098 0.902 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 11.414 2.099 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.044 3.956 5 N -0.382 5.382 6 C 0.009 3.991 7 C -0.198 4.198 8 C -0.164 4.164 9 C 0.032 3.968 10 C -0.538 4.538 11 H 0.087 0.913 12 C -0.180 4.180 13 N -0.471 5.471 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.216 4.216 19 C -0.187 4.187 20 H 0.141 0.859 21 H 0.110 0.890 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.230 0.770 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.287 11.258 2.487 12.300 hybrid contribution 0.380 -0.786 -0.187 0.893 sum -3.906 10.472 2.300 11.411 Atomic orbital electron populations 1.23997 0.94849 1.02813 0.98747 1.21843 0.95821 0.95210 1.02162 1.20850 1.00396 0.93420 1.02323 1.20083 0.97532 0.93561 0.84433 1.43897 1.64376 1.23139 1.06751 1.17496 0.99272 0.89386 0.92961 1.20243 1.05740 0.96880 0.96902 1.20868 1.02568 0.96088 0.96927 1.17831 0.93559 0.93647 0.91741 1.19584 1.27936 0.99071 1.07233 0.91276 1.26630 0.96643 1.01087 0.93623 1.69918 1.28602 1.31566 1.16984 0.85332 0.78807 0.76971 0.78998 1.18727 1.19448 1.18568 1.20769 1.05392 0.98024 0.97370 1.20107 1.05154 0.98977 0.94444 0.85926 0.88959 0.91883 0.90220 0.91352 0.94002 0.93461 0.76985 0.87921 0.88275 0.90726 0.88337 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 13.90 67.78 0.94 -2.33 16 2 C -0.15 -3.37 5.42 -16.49 -0.09 -3.46 16 3 C -0.11 -2.05 10.12 71.24 0.72 -1.33 16 4 C 0.17 5.02 5.05 85.63 0.43 5.45 16 5 N -0.75 -25.59 5.69 -342.72 -1.95 -27.54 16 6 C 0.11 4.74 6.67 38.67 0.26 5.00 16 7 C -0.18 -8.50 9.23 22.15 0.20 -8.29 16 8 C -0.14 -7.99 8.64 22.48 0.19 -7.79 16 9 C 0.04 1.99 5.57 -21.27 -0.12 1.88 16 10 C -0.51 -28.92 9.03 23.38 0.21 -28.71 16 11 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 12 C 0.03 1.71 5.13 85.23 0.44 2.15 16 13 N -0.84 -46.73 10.96 21.82 0.24 -46.50 16 14 Si 0.98 40.49 29.60 68.60 2.03 42.52 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 16 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 C -0.20 -9.97 9.74 22.48 0.22 -9.75 16 19 C -0.16 -7.39 9.82 22.15 0.22 -7.17 16 20 H 0.12 1.80 7.83 -2.91 -0.02 1.78 16 21 H 0.09 1.95 7.99 -2.91 -0.02 1.93 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.11 7.78 -2.39 -0.02 1.09 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.04 1.34 7.78 -2.39 -0.02 1.32 16 26 H 0.05 1.46 7.91 -2.38 -0.02 1.44 16 27 H 0.40 11.90 8.46 -92.71 -0.78 11.12 16 28 H 0.10 4.54 6.68 -2.91 -0.02 4.52 16 29 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 30 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 31 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 32 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -61.96 275.12 4.27 -57.70 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.63 Total: -54.36 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.71 Total: -74.03 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -61.96 4.27 -57.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051753680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.221 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds