Wall clock time and date at job start Mon Mar 30 2020 20:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31804 * 119.12306 * 2 1 4 4 C 1.32325 * 120.81660 * 179.97438 * 3 2 1 5 5 C 1.38621 * 119.10313 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.80100 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46932 * 264.97963 * 6 5 4 8 8 H 1.08000 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31523 * 120.00260 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00225 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47108 * 89.99587 * 11 9 7 13 13 H 1.48500 * 109.47341 * 209.99787 * 11 9 7 14 14 H 1.48505 * 109.47021 * 329.99885 * 11 9 7 15 15 C 1.38576 * 118.39798 * 0.02562 * 5 4 3 16 16 C 1.50706 * 120.44896 * 180.02562 * 15 5 4 17 17 C 1.52995 * 117.50181 * 188.74833 * 16 15 5 18 18 C 1.52993 * 117.50081 * 120.08598 * 16 15 5 19 19 N 1.31785 * 119.11701 * 180.25056 * 2 1 3 20 20 H 1.08997 * 109.47109 * 90.00133 * 1 2 3 21 21 H 1.09008 * 109.47406 * 210.00676 * 1 2 3 22 22 H 1.09006 * 109.47054 * 329.99928 * 1 2 3 23 23 H 1.07997 * 120.45228 * 180.02562 * 4 3 2 24 24 H 1.08997 * 109.46952 * 24.97964 * 6 5 4 25 25 H 1.09002 * 109.47258 * 144.98248 * 6 5 4 26 26 H 0.96992 * 120.00131 * 180.02562 * 10 9 7 27 27 H 1.08998 * 115.54512 * 334.41595 * 16 15 5 28 28 H 1.09000 * 117.49859 * 0.02562 * 17 16 15 29 29 H 1.08999 * 117.49900 * 145.01759 * 17 16 15 30 30 H 1.08998 * 117.50372 * 214.98309 * 18 16 15 31 31 H 1.09006 * 117.50059 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1905 0.0005 5 6 4.1808 -0.0002 0.0016 6 6 5.6878 -0.0003 0.0028 7 6 6.1912 -0.1253 -1.4122 8 1 5.4900 -0.1979 -2.2304 9 6 7.5469 -0.1481 -1.6621 10 7 8.4009 -0.0603 -0.6656 11 14 8.1710 -0.3038 -3.4158 12 1 8.3370 1.0497 -4.0041 13 1 9.4789 -1.0071 -3.4153 14 1 7.1932 -1.0776 -4.2223 15 6 3.4712 -1.1905 0.0015 16 6 4.1959 -2.5118 0.0033 17 6 3.3600 -3.7764 -0.2033 18 6 3.9379 -3.4576 1.1778 19 7 2.1482 -1.1513 -0.0050 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5140 22 1 -0.3633 0.8900 0.5139 23 1 3.9907 2.1373 0.0009 24 1 6.0508 0.9313 0.4366 25 1 6.0507 -0.8418 0.5931 26 1 9.3546 -0.0759 -0.8415 27 1 5.2002 -2.4976 -0.4202 28 1 2.2858 -3.6527 -0.3408 29 1 3.8144 -4.5944 -0.7623 30 1 4.7722 -4.0660 1.5269 31 1 3.2441 -3.1240 1.9496 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261246378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:49 Heat of formation + Delta-G solvation = 53.306709 kcal Electronic energy + Delta-G solvation = -14257.453529 eV Core-core repulsion = 11925.160451 eV Total energy + Delta-G solvation = -2332.293078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55217 -36.81505 -34.21746 -32.65273 -32.24129 -29.59216 -26.32928 -24.83743 -23.25768 -21.99280 -21.16244 -20.16661 -17.07351 -16.44565 -15.93237 -14.85306 -14.70792 -14.53848 -13.46394 -13.26276 -12.76879 -12.62397 -12.25448 -12.08710 -11.72436 -11.26475 -11.21184 -11.12477 -10.80470 -10.70239 -10.49388 -10.02257 -9.74375 -9.54927 -9.42608 -8.66579 -8.44010 -8.12269 -6.15445 -4.20591 1.63394 1.69849 3.24082 3.31083 3.34994 4.07896 4.33550 4.42601 4.59452 4.66185 4.97377 5.19128 5.32958 5.46858 5.68539 5.69167 5.76834 5.79413 5.85663 5.97049 6.02456 6.18482 6.37656 6.50395 6.59685 6.76083 7.10395 7.39870 7.50865 7.69237 7.80056 8.15918 8.72873 8.83955 9.44333 10.93990 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.009241 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.729775 B = 3029.320484 C = 3534.448594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.277 3.723 3 N -0.527 5.527 4 C 0.132 3.868 5 C -0.131 4.131 6 C 0.058 3.942 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.196 3.804 16 C -0.105 4.105 17 C -0.164 4.164 18 C -0.162 4.162 19 N -0.521 5.521 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.163 0.837 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -3.339 2.144 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.241 5.241 4 C -0.032 4.032 5 C -0.135 4.135 6 C 0.020 3.980 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.528 5.528 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.051 3.949 16 C -0.123 4.123 17 C -0.201 4.201 18 C -0.200 4.200 19 N -0.236 5.236 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.180 0.820 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.247 -3.317 2.176 10.988 hybrid contribution 1.483 0.098 -1.022 1.804 sum -8.765 -3.218 1.154 9.408 Atomic orbital electron populations 1.20375 0.86765 1.03112 1.02966 1.22853 0.97494 0.83801 0.94969 1.68090 1.10518 1.30440 1.15076 1.23094 0.88780 0.98738 0.92632 1.22183 1.01937 0.93215 0.96128 1.18250 0.82569 0.99010 0.98124 1.20963 0.91451 1.51424 0.91513 0.92667 1.24972 0.96781 0.94922 0.97254 1.69944 1.02338 1.49687 1.30843 0.86548 0.78306 0.78378 0.84601 1.20497 1.21016 1.19775 1.20572 0.88260 0.94326 0.91760 1.21081 1.00725 0.86224 1.04304 1.22905 1.00377 0.97816 0.98985 1.22889 1.03114 1.02405 0.91637 1.67787 1.09895 1.30581 1.15296 0.90612 0.90488 0.90415 0.81955 0.94944 0.94335 0.92648 0.84060 0.87968 0.88910 0.88482 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.32 36.00 0.37 -0.61 16 2 C 0.28 5.09 7.64 -157.20 -1.20 3.89 16 3 N -0.53 -10.28 10.33 -10.72 -0.11 -10.39 16 4 C 0.13 2.68 10.99 -17.20 -0.19 2.49 16 5 C -0.13 -2.85 5.10 -104.36 -0.53 -3.38 16 6 C 0.06 1.43 4.48 -29.03 -0.13 1.30 16 7 C -0.52 -13.73 8.68 -34.44 -0.30 -14.03 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 11 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.20 4.04 6.48 -82.24 -0.53 3.51 16 16 C -0.10 -1.96 5.24 -91.77 -0.48 -2.44 16 17 C -0.16 -2.54 10.04 -26.70 -0.27 -2.80 16 18 C -0.16 -2.52 10.24 -26.70 -0.27 -2.79 16 19 N -0.52 -10.12 9.39 -6.99 -0.07 -10.18 16 20 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.16 2.98 8.06 -52.49 -0.42 2.55 16 24 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.04 0.98 7.06 -51.93 -0.37 0.61 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.14 2.92 6.76 -51.93 -0.35 2.57 16 28 H 0.10 1.60 7.61 -51.93 -0.39 1.21 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 271.00 15.07 4.08 4.08 Total: -1.00 -28.99 271.00 -8.04 -37.03 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.03 Total: 1.21 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -3.63 Total: -13.27 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.56 Total: -44.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.99 -8.04 -37.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.340 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds