Wall clock time and date at job start Mon Mar 30 2020 20:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31804 * 119.12306 * 2 1 4 4 C 1.32325 * 120.81660 * 179.97438 * 3 2 1 5 5 C 1.38621 * 119.10313 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.80100 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46932 * 264.97963 * 6 5 4 8 8 H 1.08000 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31523 * 120.00260 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00225 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47108 * 89.99587 * 11 9 7 13 13 H 1.48500 * 109.47341 * 209.99787 * 11 9 7 14 14 H 1.48505 * 109.47021 * 329.99885 * 11 9 7 15 15 C 1.38576 * 118.39798 * 0.02562 * 5 4 3 16 16 C 1.50706 * 120.44896 * 180.02562 * 15 5 4 17 17 C 1.52995 * 117.50181 * 188.74833 * 16 15 5 18 18 C 1.52993 * 117.50081 * 120.08598 * 16 15 5 19 19 N 1.31785 * 119.11701 * 180.25056 * 2 1 3 20 20 H 1.08997 * 109.47109 * 90.00133 * 1 2 3 21 21 H 1.09008 * 109.47406 * 210.00676 * 1 2 3 22 22 H 1.09006 * 109.47054 * 329.99928 * 1 2 3 23 23 H 1.07997 * 120.45228 * 180.02562 * 4 3 2 24 24 H 1.08997 * 109.46952 * 24.97964 * 6 5 4 25 25 H 1.09002 * 109.47258 * 144.98248 * 6 5 4 26 26 H 0.96992 * 120.00131 * 180.02562 * 10 9 7 27 27 H 1.08998 * 115.54512 * 334.41595 * 16 15 5 28 28 H 1.09000 * 117.49859 * 0.02562 * 17 16 15 29 29 H 1.08999 * 117.49900 * 145.01759 * 17 16 15 30 30 H 1.08998 * 117.50372 * 214.98309 * 18 16 15 31 31 H 1.09006 * 117.50059 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1905 0.0005 5 6 4.1808 -0.0002 0.0016 6 6 5.6878 -0.0003 0.0028 7 6 6.1912 -0.1253 -1.4122 8 1 5.4900 -0.1979 -2.2304 9 6 7.5469 -0.1481 -1.6621 10 7 8.4009 -0.0603 -0.6656 11 14 8.1710 -0.3038 -3.4158 12 1 8.3370 1.0497 -4.0041 13 1 9.4789 -1.0071 -3.4153 14 1 7.1932 -1.0776 -4.2223 15 6 3.4712 -1.1905 0.0015 16 6 4.1959 -2.5118 0.0033 17 6 3.3600 -3.7764 -0.2033 18 6 3.9379 -3.4576 1.1778 19 7 2.1482 -1.1513 -0.0050 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5140 22 1 -0.3633 0.8900 0.5139 23 1 3.9907 2.1373 0.0009 24 1 6.0508 0.9313 0.4366 25 1 6.0507 -0.8418 0.5931 26 1 9.3546 -0.0759 -0.8415 27 1 5.2002 -2.4976 -0.4202 28 1 2.2858 -3.6527 -0.3408 29 1 3.8144 -4.5944 -0.7623 30 1 4.7722 -4.0660 1.5269 31 1 3.2441 -3.1240 1.9496 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261246378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:48 Heat of formation + Delta-G solvation = 37.459701 kcal Electronic energy + Delta-G solvation = -14258.140707 eV Core-core repulsion = 11925.160451 eV Total energy + Delta-G solvation = -2332.980256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.07564 -38.18456 -36.01704 -34.27398 -33.92972 -31.13600 -28.04601 -26.34607 -25.03878 -23.26634 -22.78373 -21.63403 -18.66853 -18.46324 -17.35163 -16.67824 -16.22388 -15.94191 -15.03809 -14.81066 -14.43821 -14.15102 -13.66089 -13.48264 -13.17258 -13.02184 -12.82428 -12.59642 -12.39400 -12.35607 -12.14961 -11.67406 -11.44727 -11.21650 -10.93968 -10.64557 -10.09654 -9.75741 -8.22907 -6.35143 0.08034 0.12724 1.38781 1.39962 1.50406 2.37549 2.67305 3.00670 3.09059 3.19089 3.22549 3.54184 3.94277 4.15989 4.20044 4.23905 4.36366 4.57816 4.69780 4.76224 4.76335 4.93727 5.06922 5.10512 5.24771 5.31267 5.33985 5.57980 5.62688 5.69473 6.09772 6.15069 6.74677 7.19923 7.33271 8.86464 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.009241 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.729775 B = 3029.320484 C = 3534.448594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.275 3.725 3 N -0.534 5.534 4 C 0.132 3.868 5 C -0.164 4.164 6 C 0.075 3.925 7 C -0.524 4.524 8 H 0.045 0.955 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.197 3.803 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.144 4.144 19 N -0.524 5.524 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.173 0.827 24 H 0.012 0.988 25 H 0.020 0.980 26 H 0.267 0.733 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 -4.165 1.592 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.007 3.993 3 N -0.249 5.249 4 C -0.032 4.032 5 C -0.168 4.168 6 C 0.037 3.963 7 C -0.562 4.562 8 H 0.063 0.937 9 C -0.183 4.183 10 N -0.561 5.561 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.202 1.202 14 H -0.195 1.195 15 C 0.051 3.949 16 C -0.160 4.160 17 C -0.178 4.178 18 C -0.182 4.182 19 N -0.239 5.239 20 H 0.111 0.889 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.190 0.810 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.770 -4.142 1.626 12.583 hybrid contribution 1.865 0.349 -0.813 2.064 sum -9.905 -3.793 0.813 10.637 Atomic orbital electron populations 1.20568 0.82966 1.04807 1.04541 1.23960 0.99726 0.83206 0.92361 1.68230 1.09765 1.31005 1.15927 1.23273 0.89440 0.98740 0.91753 1.21972 1.00446 0.94709 0.99712 1.17902 0.84731 0.97007 0.96697 1.21156 0.91628 1.51148 0.92298 0.93657 1.25738 0.96949 0.94538 1.01091 1.70044 1.02673 1.50588 1.32816 0.85569 0.77846 0.78506 0.79902 1.19930 1.20249 1.19461 1.20828 0.88951 0.94608 0.90495 1.20975 1.00120 0.87030 1.07837 1.22994 1.00037 0.95951 0.98856 1.22984 1.03439 1.00460 0.91296 1.67941 1.08977 1.30935 1.16036 0.88873 0.88722 0.88804 0.80961 0.96946 0.96152 0.92405 0.86863 0.87754 0.86872 0.86705 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.32 71.24 0.74 -0.92 16 2 C 0.27 9.61 7.64 138.75 1.06 10.67 16 3 N -0.53 -20.32 10.33 -187.84 -1.94 -22.26 16 4 C 0.13 5.41 10.99 84.71 0.93 6.34 16 5 C -0.16 -7.34 5.10 -19.69 -0.10 -7.44 16 6 C 0.07 3.81 4.48 29.10 0.13 3.94 16 7 C -0.52 -28.72 8.68 25.60 0.22 -28.50 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.49 16 9 C 0.02 0.89 5.46 84.65 0.46 1.35 16 10 N -0.92 -53.00 13.29 21.45 0.28 -52.71 16 11 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.20 8.11 6.48 42.56 0.28 8.39 16 16 C -0.14 -5.26 5.24 -11.54 -0.06 -5.32 16 17 C -0.14 -4.10 10.04 30.62 0.31 -3.80 16 18 C -0.14 -4.24 10.24 30.62 0.31 -3.92 16 19 N -0.52 -19.66 9.39 -176.02 -1.65 -21.31 16 20 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 22 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 23 H 0.17 6.44 8.06 -2.91 -0.02 6.42 16 24 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 25 H 0.02 1.09 7.06 -2.39 -0.02 1.07 16 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.11 4.87 6.76 -2.39 -0.02 4.85 16 28 H 0.10 3.01 7.61 -2.39 -0.02 2.99 16 29 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -62.20 271.00 4.11 -58.09 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.12 Total: 12.31 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.28 Total: -19.21 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -3.31 Total: -96.28 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.20 4.11 -58.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.548 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds