Wall clock time and date at job start Mon Mar 30 2020 20:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46882 * 299.99610 * 3 2 1 6 6 H 1.48492 * 109.47219 * 60.00349 * 3 2 1 7 7 C 1.37881 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99377 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00204 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.90869 * 300.70154 * 9 7 2 11 11 N 1.47904 * 110.08189 * 61.91409 * 9 7 2 12 12 C 1.48524 * 105.82014 * 94.11257 * 11 9 7 13 13 C 1.54933 * 103.23084 * 39.20845 * 12 11 9 14 14 C 1.53994 * 109.91436 * 179.59833 * 9 7 2 15 15 H 1.09001 * 110.30888 * 0.59187 * 14 9 7 16 16 C 1.50704 * 110.30579 * 122.75871 * 14 9 7 17 17 C 1.38671 * 120.41971 * 239.99475 * 16 14 9 18 18 C 1.38629 * 118.41873 * 180.02562 * 17 16 14 19 19 C 1.38214 * 119.16403 * 0.02562 * 18 17 16 20 20 N 1.31862 * 120.76494 * 359.97438 * 19 18 17 21 21 C 1.31883 * 121.72391 * 359.70254 * 20 19 18 22 22 H 0.96994 * 119.99833 * 359.97438 * 1 2 3 23 23 H 1.00907 * 110.99608 * 214.62882 * 11 9 7 24 24 H 1.09005 * 110.66502 * 280.76757 * 12 11 9 25 25 H 1.09005 * 110.66481 * 157.64219 * 12 11 9 26 26 H 1.08998 * 110.72508 * 204.22670 * 13 12 11 27 27 H 1.08998 * 110.72196 * 80.94377 * 13 12 11 28 28 H 1.08001 * 120.78747 * 359.97438 * 17 16 14 29 29 H 1.08004 * 120.41307 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.61959 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.61944 * 180.31484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6127 -2.5592 0.8809 11 7 0.4303 -2.6117 -1.2258 12 6 1.2606 -3.3628 -2.2018 13 6 1.9524 -4.4373 -1.3259 14 6 2.2427 -3.6773 -0.0113 15 1 3.2684 -3.3086 -0.0060 16 6 2.0020 -4.5744 1.1755 17 6 3.0056 -4.7897 2.1078 18 6 2.7394 -5.6230 3.1833 19 6 1.4915 -6.2077 3.2895 20 7 0.5607 -5.9802 2.3836 21 6 0.7766 -5.1885 1.3512 22 1 -0.4849 0.8400 0.0004 23 1 -0.4347 -3.0963 -1.0383 24 1 1.9999 -2.7075 -2.6625 25 1 0.6334 -3.8305 -2.9608 26 1 2.8796 -4.7743 -1.7894 27 1 1.2823 -5.2779 -1.1457 28 1 3.9720 -4.3201 1.9982 29 1 3.4975 -5.8129 3.9287 30 1 1.2760 -6.8578 4.1246 31 1 -0.0118 -5.0220 0.6321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:27 Heat of formation + Delta-G solvation = 15.273430 kcal Electronic energy + Delta-G solvation = -14533.000427 eV Core-core repulsion = 12199.058102 eV Total energy + Delta-G solvation = -2333.942325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29554 -39.04787 -34.46270 -33.76221 -32.58188 -30.08819 -29.37266 -26.45455 -24.55313 -23.67249 -22.18761 -20.71521 -18.36582 -18.04599 -17.14627 -17.01440 -16.47462 -15.61198 -15.40534 -14.84434 -14.46537 -14.37173 -13.91222 -13.48334 -13.26290 -13.00302 -12.66128 -12.50680 -12.38831 -11.98626 -11.59659 -11.40377 -11.17283 -10.61647 -10.48673 -10.33014 -9.83178 -8.77265 -7.97049 -6.13276 0.24430 0.40450 1.41294 1.43634 1.53285 2.47679 2.91201 3.24971 3.55526 3.82784 3.86895 4.04512 4.10960 4.21793 4.26163 4.42716 4.54250 4.70857 4.77077 4.89276 4.96249 5.00663 5.15818 5.22470 5.26854 5.50544 5.64750 5.80175 5.85593 6.28772 6.49913 6.95156 7.06018 7.17324 7.56938 9.08471 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.009242 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.203678 B = 3029.051013 C = 3389.034424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.030 3.970 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.223 3.777 10 H -0.006 1.006 11 N -0.662 5.662 12 C 0.049 3.951 13 C -0.136 4.136 14 C -0.069 4.069 15 H 0.071 0.929 16 C -0.114 4.114 17 C -0.090 4.090 18 C -0.160 4.160 19 C 0.071 3.929 20 N -0.508 5.508 21 C 0.083 3.917 22 H 0.254 0.746 23 H 0.308 0.692 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.184 0.816 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -10.964 2.684 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.115 3.885 10 H 0.012 0.988 11 N -0.288 5.288 12 C -0.081 4.081 13 C -0.175 4.175 14 C -0.090 4.090 15 H 0.090 0.910 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.180 4.180 19 C -0.086 4.086 20 N -0.217 5.217 21 C -0.073 4.073 22 H 0.063 0.937 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.187 0.813 30 H 0.201 0.799 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.964 -10.563 2.506 11.937 hybrid contribution 0.927 0.742 0.187 1.202 sum 5.891 -9.821 2.694 11.765 Atomic orbital electron populations 1.70149 1.07151 1.26284 1.49475 1.25668 0.95428 1.01851 0.94269 0.85734 0.79294 0.80588 0.77249 1.19091 1.21065 1.20974 1.21406 0.92086 0.91701 1.51801 0.93233 1.19658 0.89386 0.91428 0.88029 0.98767 1.62899 1.05001 1.49595 1.11341 1.23023 0.96501 0.93012 0.95556 1.23161 1.01482 0.97995 0.94880 1.21511 1.01273 0.94430 0.91836 0.91018 1.21033 0.95251 0.97379 0.97994 1.21843 0.99585 0.96613 0.93540 1.22465 0.99228 0.97405 0.98871 1.23280 0.89540 0.98395 0.97380 1.67640 1.35336 1.15536 1.03213 1.22445 0.95732 0.93631 0.95536 0.93722 0.87726 0.92425 0.90317 0.90154 0.91349 0.83721 0.81289 0.79889 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.13 12.88 21.45 0.28 -52.86 16 2 C 0.03 1.69 5.41 84.65 0.46 2.14 16 3 Si 0.94 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.53 -29.30 8.74 25.60 0.22 -29.08 16 8 H 0.05 2.68 7.33 -2.91 -0.02 2.66 16 9 C 0.22 10.96 2.57 44.31 0.11 11.08 16 10 H -0.01 -0.31 7.36 -2.39 -0.02 -0.33 16 11 N -0.66 -30.92 6.61 -484.04 -3.20 -34.11 16 12 C 0.05 1.84 7.53 86.65 0.65 2.49 16 13 C -0.14 -4.52 6.49 31.80 0.21 -4.31 16 14 C -0.07 -2.72 2.86 -10.66 -0.03 -2.75 16 15 H 0.07 2.87 7.22 -2.39 -0.02 2.86 16 16 C -0.11 -4.09 4.72 -19.77 -0.09 -4.18 16 17 C -0.09 -2.70 9.82 22.47 0.22 -2.48 16 18 C -0.16 -3.93 10.11 22.36 0.23 -3.70 16 19 C 0.07 1.89 11.18 84.68 0.95 2.83 16 20 N -0.51 -17.21 10.36 -195.84 -2.03 -19.24 16 21 C 0.08 2.99 9.36 84.67 0.79 3.78 16 22 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 23 H 0.31 13.68 8.92 -89.69 -0.80 12.88 16 24 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 25 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.12 6.88 -2.39 -0.02 2.10 16 28 H 0.15 3.82 8.03 -2.91 -0.02 3.80 16 29 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.14 5.07 7.71 -2.91 -0.02 5.05 16 Total: -1.00 -65.48 261.79 1.12 -64.36 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.33 Total: 19.60 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.72 Total: -24.16 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.95 Total: -106.21 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.48 1.12 -64.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.633 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds