Wall clock time and date at job start Mon Mar 30 2020 20:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46694 * 2 1 4 4 C 1.50705 * 109.46962 * 119.99244 * 2 1 3 5 5 H 1.07993 * 119.99662 * 120.00252 * 4 2 1 6 6 C 1.37871 * 120.00300 * 300.00462 * 4 2 1 7 7 N 1.31523 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47177 * 89.99925 * 8 6 4 10 10 H 1.48503 * 109.47275 * 209.99659 * 8 6 4 11 11 H 1.48498 * 109.47086 * 329.99742 * 8 6 4 12 12 C 1.50693 * 109.47307 * 239.99416 * 2 1 3 13 13 C 1.38402 * 120.01315 * 299.97842 * 12 2 1 14 14 C 1.38237 * 119.76852 * 180.02562 * 13 12 2 15 15 C 1.37980 * 120.35114 * 359.83203 * 14 13 12 16 16 C 1.39248 * 120.24034 * 0.02562 * 15 14 13 17 17 C 1.37692 * 120.01059 * 119.99775 * 12 2 1 18 18 C 1.51649 * 132.17908 * 0.34480 * 17 12 2 19 19 C 1.54704 * 101.92914 * 164.58928 * 18 17 12 20 20 O 1.36381 * 129.80801 * 180.81051 * 16 15 14 21 21 H 1.08998 * 109.47231 * 300.00387 * 1 2 3 22 22 H 1.08998 * 109.47106 * 60.00850 * 1 2 3 23 23 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99964 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.11153 * 0.04343 * 13 12 2 26 26 H 1.08001 * 119.82714 * 179.80931 * 14 13 12 27 27 H 1.08003 * 119.88107 * 179.97438 * 15 14 13 28 28 H 1.09001 * 110.93807 * 46.42830 * 18 17 12 29 29 H 1.08996 * 110.96579 * 282.76199 * 18 17 12 30 30 H 1.09002 * 110.74802 * 143.61580 * 19 18 17 31 31 H 1.08999 * 110.74915 * 266.78068 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6303 -0.5435 4.4120 10 1 1.3443 -0.9485 5.1124 11 1 2.4880 -2.5650 3.7125 12 6 2.0324 -0.7105 -1.2303 13 6 1.6986 -2.0357 -1.4493 14 6 2.1626 -2.6827 -2.5793 15 6 2.9533 -2.0133 -3.4907 16 6 3.2912 -0.6791 -3.2794 17 6 2.8240 -0.0416 -2.1369 18 6 3.3555 1.3783 -2.1717 19 6 4.4648 1.2782 -3.2454 20 8 4.0376 0.1648 -4.0480 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1621 3.4843 25 1 1.0775 -2.5623 -0.7398 26 1 1.9053 -3.7177 -2.7495 27 1 3.3120 -2.5263 -4.3709 28 1 3.7729 1.6618 -1.2056 29 1 2.5783 2.0782 -2.4786 30 1 4.5088 2.1899 -3.8413 31 1 5.4309 1.0730 -2.7845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:07 Heat of formation + Delta-G solvation = -19.654726 kcal Electronic energy + Delta-G solvation = -14514.162604 eV Core-core repulsion = 12146.412929 eV Total energy + Delta-G solvation = -2367.749675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52573 -37.22600 -34.24330 -32.14318 -30.80152 -28.88159 -27.68468 -25.14705 -23.12134 -22.31758 -21.08456 -19.42528 -16.69215 -16.21942 -15.94973 -15.64827 -14.91505 -14.57818 -13.25907 -13.17988 -12.79953 -12.57907 -12.21158 -12.05932 -11.55000 -11.32941 -11.08494 -10.98214 -10.91341 -10.74522 -10.43062 -10.13456 -10.07492 -9.35092 -9.03365 -8.39555 -7.87246 -7.50926 -6.03844 -4.10573 1.95731 2.10781 3.27914 3.34846 3.38651 3.71512 4.34332 4.46485 4.95826 5.11911 5.27023 5.34008 5.49060 5.62407 5.72900 5.95978 6.07122 6.14232 6.26606 6.36493 6.71312 6.79751 6.89556 6.99308 7.10154 7.18583 7.28860 7.31919 7.68790 7.80944 7.94501 8.06765 8.36633 8.92087 9.54038 11.01784 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.008921 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.528304 B = 3137.831099 C = 3372.602703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.036 0.964 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.015 3.985 13 C -0.137 4.137 14 C -0.095 4.095 15 C -0.165 4.165 16 C 0.091 3.909 17 C -0.179 4.179 18 C -0.105 4.105 19 C 0.052 3.948 20 O -0.315 6.315 21 H 0.086 0.914 22 H 0.008 0.992 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -1.117 -8.500 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.054 0.946 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.015 3.985 13 C -0.155 4.155 14 C -0.113 4.113 15 C -0.184 4.184 16 C 0.047 3.953 17 C -0.180 4.180 18 C -0.142 4.142 19 C -0.023 4.023 20 O -0.230 6.230 21 H 0.104 0.896 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.289 -1.007 -8.591 9.254 hybrid contribution 0.362 -0.333 1.028 1.140 sum 3.651 -1.340 -7.562 8.504 Atomic orbital electron populations 1.21778 0.97489 0.99406 1.00253 1.17907 0.92936 0.95554 0.88480 0.94635 1.21101 1.31170 1.12410 0.89779 0.92419 1.24956 0.95028 0.95023 0.98926 1.69888 1.36653 1.22885 1.23433 0.86579 0.78576 0.80164 0.82641 1.20710 1.21202 1.19838 1.19942 0.90940 0.93267 0.94338 1.21004 1.02298 0.94753 0.97482 1.20789 0.97219 0.99109 0.94203 1.19965 1.05435 0.90820 1.02147 1.19587 0.93603 0.91252 0.90899 1.20578 1.04376 0.95574 0.97471 1.21679 0.97550 0.94862 1.00138 1.23750 0.97715 0.88554 0.92297 1.86792 1.67107 1.33600 1.35488 0.89567 0.97312 0.95143 0.92938 0.85511 0.86174 0.86734 0.88867 0.89861 0.88397 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.83 16 2 C 0.07 1.73 2.48 -92.92 -0.23 1.50 16 3 H 0.04 0.94 7.17 -51.93 -0.37 0.56 16 4 C -0.51 -13.63 8.24 -34.44 -0.28 -13.92 16 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.02 0.34 4.72 -104.76 -0.49 -0.16 16 13 C -0.14 -2.77 8.73 -39.52 -0.35 -3.12 16 14 C -0.10 -1.65 10.02 -39.68 -0.40 -2.05 16 15 C -0.16 -2.89 10.06 -39.30 -0.40 -3.29 16 16 C 0.09 1.73 7.04 -38.95 -0.27 1.46 16 17 C -0.18 -3.64 6.08 -104.10 -0.63 -4.27 16 18 C -0.11 -1.79 6.35 -26.52 -0.17 -1.96 16 19 C 0.05 0.75 8.00 38.05 0.30 1.05 16 20 O -0.32 -5.55 11.12 -20.96 -0.23 -5.78 16 21 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 23 H 0.03 0.69 7.40 -51.93 -0.38 0.31 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.13 2.54 7.59 -52.49 -0.40 2.14 16 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 28 H 0.09 1.61 8.01 -51.93 -0.42 1.19 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 259.95 15.07 3.92 3.92 Total: -1.00 -28.87 259.95 -7.35 -36.22 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -3.96 Total: -0.11 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.69 Total: -26.00 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.63 Total: -24.23 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.23 Total: -5.78 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.87 -7.35 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.563 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds