Wall clock time and date at job start Mon Mar 30 2020 20:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 C 1.38288 * 120.11160 * 299.71969 * 12 2 1 14 14 C 1.37928 * 120.34705 * 179.97438 * 13 12 2 15 15 C 1.39288 * 120.24270 * 0.56016 * 14 13 12 16 16 C 1.38881 * 118.87417 * 359.40249 * 15 14 13 17 17 C 1.37742 * 120.78752 * 0.42707 * 16 15 14 18 18 C 1.51642 * 107.03957 * 180.68771 * 16 15 14 19 19 C 1.54709 * 101.91805 * 15.47244 * 18 16 15 20 20 O 1.36138 * 129.88602 * 179.09458 * 15 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.82698 * 0.17774 * 13 12 2 26 26 H 1.08008 * 119.88121 * 180.27652 * 14 13 12 27 27 H 1.08000 * 120.01260 * 179.81573 * 17 16 15 28 28 H 1.08996 * 110.94431 * 133.62786 * 18 16 15 29 29 H 1.09006 * 110.93699 * 257.28360 * 18 16 15 30 30 H 1.08998 * 110.74929 * 93.02659 * 19 18 16 31 31 H 1.09002 * 110.74730 * 216.18717 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 6 2.0324 -0.7103 -1.2306 13 6 1.7045 -2.0359 -1.4489 14 6 2.1612 -2.6906 -2.5737 15 6 2.9669 -2.0248 -3.4943 16 6 3.2886 -0.6934 -3.2646 17 6 2.8285 -0.0404 -2.1424 18 6 4.1499 -0.2374 -4.4264 19 6 3.9007 -1.3551 -5.4667 20 8 3.5335 -2.4772 -4.6466 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 1.0849 -2.5604 -0.7365 26 1 1.8968 -3.7247 -2.7390 27 1 3.0888 0.9942 -1.9747 28 1 3.8147 0.7284 -4.8044 29 1 5.2010 -0.1982 -4.1402 30 1 3.0855 -1.0836 -6.1374 31 1 4.8088 -1.5666 -6.0312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:13 Heat of formation + Delta-G solvation = -19.114840 kcal Electronic energy + Delta-G solvation = -14241.678949 eV Core-core repulsion = 11873.952685 eV Total energy + Delta-G solvation = -2367.726263 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60149 -37.40225 -33.95034 -32.26304 -31.08460 -28.86716 -27.74940 -25.12083 -23.07366 -22.24794 -21.42201 -19.40131 -16.93827 -16.50854 -15.95956 -15.52369 -14.98491 -14.11958 -13.58027 -13.03871 -12.86833 -12.62251 -12.50605 -12.02709 -11.83162 -11.51950 -11.36396 -10.98592 -10.92340 -10.45615 -10.33998 -10.06023 -9.99935 -9.46243 -8.93893 -8.38179 -8.26474 -7.31205 -6.01395 -4.08068 1.92724 2.06670 3.28945 3.37227 3.42075 3.63122 4.33148 4.47275 4.71321 4.88700 5.11255 5.29589 5.34828 5.53673 5.68744 5.85369 5.93247 6.12845 6.19236 6.19603 6.58618 6.84997 6.92143 6.93105 7.13345 7.17502 7.29531 7.34542 7.71256 7.78399 7.96996 8.09925 8.39748 8.95108 9.56775 11.04186 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.048156 B = 0.007095 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.309810 B = 3945.322554 C = 4050.499693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 H 0.034 0.966 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.053 4.053 13 C -0.079 4.079 14 C -0.139 4.139 15 C 0.067 3.933 16 C -0.179 4.179 17 C -0.083 4.083 18 C -0.107 4.107 19 C 0.053 3.947 20 O -0.314 6.314 21 H 0.085 0.915 22 H 0.028 0.972 23 H 0.008 0.992 24 H 0.260 0.740 25 H 0.131 0.869 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -2.211 -11.661 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.053 4.053 13 C -0.097 4.097 14 C -0.157 4.157 15 C 0.024 3.976 16 C -0.179 4.179 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.022 4.022 20 O -0.229 6.229 21 H 0.104 0.896 22 H 0.048 0.952 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.274 -2.322 -11.604 12.279 hybrid contribution 0.416 -0.246 0.842 0.971 sum 3.690 -2.568 -10.762 11.664 Atomic orbital electron populations 1.21793 0.97635 0.99311 1.00251 1.17845 0.92841 0.95373 0.88375 0.94772 1.21181 1.31055 1.12377 0.89860 0.92352 1.24962 0.95054 0.95006 0.98958 1.69894 1.36799 1.22922 1.23309 0.86532 0.78673 0.79775 0.83055 1.19727 1.21031 1.20992 1.20594 0.94759 0.93921 0.96030 1.20841 0.99038 0.94671 0.95196 1.20225 1.00086 1.00214 0.95205 1.19393 0.96530 0.93167 0.88550 1.20629 1.03218 0.95408 0.98689 1.20307 0.97742 0.99651 0.92411 1.21715 1.00084 0.99339 0.93297 1.23692 1.00560 0.84749 0.93214 1.86745 1.75547 1.32128 1.28466 0.89635 0.95244 0.97263 0.93008 0.85088 0.86504 0.86461 0.89690 0.89775 0.91221 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.79 37.16 0.33 -2.83 16 2 C 0.07 1.84 2.48 -92.92 -0.23 1.61 16 3 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 4 C -0.51 -13.72 8.24 -34.44 -0.28 -14.00 16 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.05 -1.15 4.74 -104.56 -0.50 -1.65 16 13 C -0.08 -1.61 8.69 -39.68 -0.34 -1.96 16 14 C -0.14 -2.56 10.06 -39.30 -0.40 -2.95 16 15 C 0.07 1.23 7.04 -38.95 -0.27 0.96 16 16 C -0.18 -3.17 6.27 -104.10 -0.65 -3.82 16 17 C -0.08 -1.63 9.66 -39.72 -0.38 -2.02 16 18 C -0.11 -1.41 7.12 -26.52 -0.19 -1.60 16 19 C 0.05 0.65 8.01 38.06 0.30 0.95 16 20 O -0.31 -5.20 11.10 -20.18 -0.22 -5.42 16 21 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 22 H 0.03 0.66 7.41 -51.93 -0.38 0.28 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.13 2.61 7.59 -52.48 -0.40 2.22 16 26 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 27 H 0.12 2.17 7.95 -52.49 -0.42 1.75 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -29.13 261.26 -7.39 -36.52 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.99 Total: -0.98 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.71 Total: -25.73 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.22 Total: -5.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.13 -7.39 -36.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.405 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds