Wall clock time and date at job start Mon Mar 30 2020 20:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 C 1.38288 * 120.11160 * 299.71969 * 12 2 1 14 14 C 1.37928 * 120.34705 * 179.97438 * 13 12 2 15 15 C 1.39288 * 120.24270 * 0.56016 * 14 13 12 16 16 C 1.38881 * 118.87417 * 359.40249 * 15 14 13 17 17 C 1.37742 * 120.78752 * 0.42707 * 16 15 14 18 18 C 1.51642 * 107.03957 * 180.68771 * 16 15 14 19 19 C 1.54709 * 101.91805 * 15.47244 * 18 16 15 20 20 O 1.36138 * 129.88602 * 179.09458 * 15 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.82698 * 0.17774 * 13 12 2 26 26 H 1.08008 * 119.88121 * 180.27652 * 14 13 12 27 27 H 1.08000 * 120.01260 * 179.81573 * 17 16 15 28 28 H 1.08996 * 110.94431 * 133.62786 * 18 16 15 29 29 H 1.09006 * 110.93699 * 257.28360 * 18 16 15 30 30 H 1.08998 * 110.74929 * 93.02659 * 19 18 16 31 31 H 1.09002 * 110.74730 * 216.18717 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 6 2.0324 -0.7103 -1.2306 13 6 1.7045 -2.0359 -1.4489 14 6 2.1612 -2.6906 -2.5737 15 6 2.9669 -2.0248 -3.4943 16 6 3.2886 -0.6934 -3.2646 17 6 2.8285 -0.0404 -2.1424 18 6 4.1499 -0.2374 -4.4264 19 6 3.9007 -1.3551 -5.4667 20 8 3.5335 -2.4772 -4.6466 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 1.0849 -2.5604 -0.7365 26 1 1.8968 -3.7247 -2.7390 27 1 3.0888 0.9942 -1.9747 28 1 3.8147 0.7284 -4.8044 29 1 5.2010 -0.1982 -4.1402 30 1 3.0855 -1.0836 -6.1374 31 1 4.8088 -1.5666 -6.0312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:12 Heat of formation + Delta-G solvation = -35.006785 kcal Electronic energy + Delta-G solvation = -14242.368075 eV Core-core repulsion = 11873.952685 eV Total energy + Delta-G solvation = -2368.415390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.89543 -38.91199 -35.81539 -33.53545 -32.95731 -30.20664 -29.30778 -27.19809 -24.34051 -23.88144 -22.75799 -21.07665 -18.38966 -18.21220 -17.26354 -16.99502 -16.71435 -15.84420 -14.95343 -14.79786 -14.15472 -14.01407 -13.99168 -13.56959 -13.44049 -13.21360 -12.83589 -12.74254 -12.54488 -12.23286 -12.14957 -11.66767 -11.48736 -11.31101 -10.89582 -10.46823 -9.71791 -8.80206 -8.08871 -6.23106 0.46676 0.56338 1.40549 1.43013 1.54301 2.42523 2.43908 2.90023 3.18453 3.58432 3.79212 4.04574 4.22267 4.32598 4.47032 4.61192 4.65015 4.73562 4.87554 4.92403 4.96405 5.05130 5.21807 5.30249 5.46413 5.51184 5.55888 5.69965 5.77727 6.07247 6.09273 6.34658 6.40722 6.85679 7.44841 8.95294 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.048156 B = 0.007095 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.309810 B = 3945.322554 C = 4050.499693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.075 3.925 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.278 1.278 12 C -0.080 4.080 13 C -0.090 4.090 14 C -0.141 4.141 15 C 0.067 3.933 16 C -0.181 4.181 17 C -0.094 4.094 18 C -0.105 4.105 19 C 0.049 3.951 20 O -0.325 6.325 21 H 0.059 0.941 22 H 0.033 0.967 23 H 0.024 0.976 24 H 0.262 0.738 25 H 0.125 0.875 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -2.941 -13.282 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.057 3.943 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.203 1.203 12 C -0.080 4.080 13 C -0.108 4.108 14 C -0.160 4.160 15 C 0.022 3.978 16 C -0.181 4.181 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.025 4.025 20 O -0.240 6.240 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.157 0.843 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.387 -3.051 -13.243 14.280 hybrid contribution 0.116 -0.012 1.216 1.222 sum 4.503 -3.063 -12.026 13.202 Atomic orbital electron populations 1.21634 0.97319 0.99332 0.99676 1.17689 0.93185 0.93922 0.89528 0.97618 1.21434 1.30992 1.12277 0.91175 0.93139 1.25702 0.95268 0.95707 1.01723 1.70012 1.37643 1.24030 1.23971 0.85571 0.78237 0.78690 0.79577 1.19458 1.20627 1.20348 1.20363 0.96997 0.94793 0.95896 1.20777 0.99702 0.94203 0.96087 1.20389 0.99830 1.01206 0.94556 1.19585 0.95839 0.93279 0.89087 1.21050 1.02817 0.95381 0.98891 1.20358 0.97853 0.99978 0.93045 1.21873 0.99917 1.00823 0.91566 1.24092 1.02884 0.82901 0.92627 1.86739 1.75073 1.34153 1.28017 0.92172 0.94815 0.95679 0.92886 0.85692 0.84315 0.86142 0.87431 0.88436 0.89477 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.79 71.98 0.63 -5.35 16 2 C 0.08 3.86 2.48 -12.29 -0.03 3.83 16 3 H 0.01 0.32 7.89 -2.39 -0.02 0.30 16 4 C -0.52 -28.89 8.24 25.60 0.21 -28.68 16 5 H 0.05 2.81 7.60 -2.91 -0.02 2.79 16 6 C 0.01 0.81 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 8 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C -0.08 -3.56 4.74 -19.82 -0.09 -3.65 16 13 C -0.09 -3.65 8.69 22.21 0.19 -3.46 16 14 C -0.14 -5.05 10.06 22.45 0.23 -4.82 16 15 C 0.07 2.30 7.04 22.68 0.16 2.45 16 16 C -0.18 -6.06 6.27 -19.53 -0.12 -6.18 16 17 C -0.09 -3.70 9.66 22.18 0.21 -3.48 16 18 C -0.10 -2.38 7.12 30.73 0.22 -2.16 16 19 C 0.05 0.98 8.01 72.56 0.58 1.56 16 20 O -0.32 -9.69 11.10 -95.12 -1.06 -10.74 16 21 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 22 H 0.03 1.56 7.41 -2.39 -0.02 1.54 16 23 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.13 5.09 7.59 -2.91 -0.02 5.07 16 26 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.12 4.49 7.95 -2.91 -0.02 4.47 16 28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.13 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.94 261.26 4.96 -57.98 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.11 Total: 8.16 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 2.64 Total: -48.69 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.06 Total: -10.74 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.94 4.96 -57.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -62.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds