Wall clock time and date at job start Mon Mar 30 2020 20:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.27343 * 2 1 4 4 C 1.54351 * 110.30281 * 237.92766 * 2 1 3 5 5 C 1.54348 * 102.38925 * 214.63174 * 4 2 1 6 6 O 1.42900 * 110.30324 * 267.32704 * 5 4 2 7 7 C 1.50703 * 110.30116 * 145.27296 * 5 4 2 8 8 H 1.08002 * 119.99685 * 244.91336 * 7 5 4 9 9 C 1.37878 * 120.00172 * 65.19561 * 7 5 4 10 10 N 1.31516 * 119.99762 * 354.72787 * 9 7 5 11 11 Si 1.86795 * 120.00085 * 174.73577 * 9 7 5 12 12 H 1.48504 * 109.47158 * 59.99928 * 11 9 7 13 13 H 1.48501 * 109.46835 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47314 * 299.99415 * 11 9 7 15 15 C 1.51370 * 105.17092 * 26.35263 * 5 4 2 16 16 C 1.38492 * 130.39024 * 162.80831 * 15 5 4 17 17 C 1.38107 * 120.21777 * 179.97438 * 16 15 5 18 18 C 1.38257 * 119.92991 * 359.97438 * 17 16 15 19 19 C 1.38101 * 119.93636 * 359.97021 * 18 17 16 20 20 C 1.38221 * 109.75793 * 342.80058 * 15 5 4 21 21 H 1.08996 * 109.47137 * 182.07248 * 1 2 3 22 22 H 1.08991 * 109.46678 * 302.07321 * 1 2 3 23 23 H 1.08997 * 109.46905 * 62.07611 * 1 2 3 24 24 H 1.09000 * 110.82374 * 96.40786 * 4 2 1 25 25 H 1.09000 * 110.82087 * 332.85441 * 4 2 1 26 26 H 0.96702 * 113.99961 * 178.62462 * 6 5 4 27 27 H 0.97000 * 119.99858 * 179.97438 * 10 9 7 28 28 H 1.08006 * 119.89307 * 0.02562 * 16 15 5 29 29 H 1.07995 * 120.03647 * 180.02562 * 17 16 15 30 30 H 1.08001 * 120.02810 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.88942 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0656 -0.7687 -1.2267 5 6 3.3439 -1.4310 -0.6702 6 8 4.4789 -0.5962 -0.9085 7 6 3.5491 -2.7839 -1.3017 8 1 3.4981 -3.6762 -0.6953 9 6 3.8077 -2.8822 -2.6524 10 7 3.7728 -1.8067 -3.4085 11 14 4.2073 -4.5429 -3.4084 12 1 3.0690 -5.4719 -3.1926 13 1 4.4429 -4.3796 -4.8655 14 1 5.4271 -5.0975 -2.7685 15 6 3.0994 -1.5770 0.8164 16 6 3.7383 -2.3668 1.7577 17 6 3.3378 -2.3349 3.0791 18 6 2.2961 -1.5117 3.4644 19 6 1.6584 -0.7225 2.5275 20 6 2.0573 -0.7547 1.2016 21 1 -0.3633 -1.0269 0.0372 22 1 -0.3632 0.5457 0.8708 23 1 -0.3633 0.4812 -0.9080 24 1 2.3067 -0.0828 -2.0388 25 1 1.3497 -1.5225 -1.5543 26 1 5.3085 -0.9518 -0.5614 27 1 3.9551 -1.8758 -4.3587 28 1 4.5530 -3.0092 1.4576 29 1 3.8384 -2.9517 3.8107 30 1 1.9813 -1.4858 4.4972 31 1 0.8445 -0.0800 2.8293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306250783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:18 Heat of formation + Delta-G solvation = -50.286687 kcal Electronic energy + Delta-G solvation = -14841.627188 eV Core-core repulsion = 12472.549212 eV Total energy + Delta-G solvation = -2369.077976 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09590 -37.63792 -35.67122 -34.27009 -32.10682 -30.38795 -29.24352 -27.33964 -24.35006 -23.33043 -21.40097 -20.88606 -19.02288 -17.66203 -16.69399 -16.29755 -15.87818 -15.68270 -15.04848 -14.65863 -14.38502 -14.08231 -13.44151 -13.24120 -13.17298 -12.84513 -12.78969 -12.77769 -12.27308 -12.13843 -11.95836 -11.75032 -11.39308 -10.94656 -10.51043 -10.15124 -9.58032 -9.32623 -8.09245 -6.31873 0.61565 0.64678 1.39501 1.39937 1.47924 2.39616 2.99861 3.16684 3.72361 3.93005 4.18743 4.28605 4.30683 4.34682 4.42762 4.64355 4.77049 4.80989 5.04052 5.08640 5.11459 5.24007 5.28706 5.49305 5.55801 5.65182 5.70408 5.70908 5.82544 6.04946 6.19772 6.30325 6.73423 7.32053 7.53860 8.92698 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.011198 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.445500 B = 2499.953603 C = 2962.006502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 H 0.073 0.927 4 C -0.067 4.067 5 C 0.272 3.728 6 O -0.570 6.570 7 C -0.573 4.573 8 H 0.049 0.951 9 C 0.036 3.964 10 N -0.887 5.887 11 Si 0.949 3.051 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.270 1.270 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.105 4.105 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.355 0.645 27 H 0.260 0.740 28 H 0.109 0.891 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 1.010 10.578 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 H 0.091 0.909 4 C -0.106 4.106 5 C 0.233 3.767 6 O -0.375 6.375 7 C -0.610 4.610 8 H 0.068 0.932 9 C -0.167 4.167 10 N -0.523 5.523 11 Si 0.774 3.226 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.195 1.195 15 C -0.122 4.122 16 C -0.137 4.137 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.105 4.105 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.200 0.800 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.458 1.469 10.093 11.131 hybrid contribution 0.944 -1.289 -0.758 1.768 sum -3.515 0.180 9.335 9.977 Atomic orbital electron populations 1.21693 0.92668 1.01725 1.02504 1.20771 0.97047 0.97967 0.91794 0.90884 1.21897 0.95412 0.97523 0.95718 1.18304 0.84471 0.88640 0.85253 1.86473 1.18012 1.50062 1.82919 1.21780 1.52070 0.93138 0.94056 0.93249 1.25708 0.94105 0.99429 0.97478 1.70186 1.46910 1.29664 1.05528 0.85777 0.78940 0.80549 0.77294 1.19826 1.20849 1.19521 1.21765 0.96673 0.96026 0.97764 1.20841 1.00423 0.98975 0.93491 1.21326 0.98310 1.00167 0.94946 1.21345 0.96202 0.96483 1.00300 1.20877 1.00946 1.00574 0.90980 1.20881 0.96938 0.97592 0.95125 0.93368 0.90559 0.92012 0.93318 0.93187 0.80001 0.93099 0.87288 0.83605 0.82665 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.98 71.98 0.65 -3.38 16 2 C -0.06 -2.29 3.46 -10.87 -0.04 -2.32 16 3 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 4 C -0.07 -3.35 4.95 31.51 0.16 -3.19 16 5 C 0.27 14.09 0.80 -11.61 -0.01 14.08 16 6 O -0.57 -30.61 12.45 -148.98 -1.85 -32.47 16 7 C -0.57 -31.90 7.99 25.60 0.20 -31.70 16 8 H 0.05 2.75 7.57 -2.91 -0.02 2.73 16 9 C 0.04 2.01 5.29 84.65 0.45 2.46 16 10 N -0.89 -51.81 11.97 21.45 0.26 -51.55 16 11 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C -0.12 -5.46 5.25 -19.59 -0.10 -5.57 16 16 C -0.12 -4.68 9.61 22.30 0.21 -4.47 16 17 C -0.13 -3.99 10.05 22.24 0.22 -3.76 16 18 C -0.13 -3.48 10.05 22.24 0.22 -3.26 16 19 C -0.12 -3.62 9.79 22.30 0.22 -3.40 16 20 C -0.11 -4.15 5.61 -19.59 -0.11 -4.26 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 2.63 7.88 -2.39 -0.02 2.62 16 25 H 0.05 2.58 7.68 -2.39 -0.02 2.56 16 26 H 0.36 17.24 9.07 -74.06 -0.67 16.56 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.14 3.45 8.00 -2.91 -0.02 3.43 16 Total: -1.00 -64.71 262.28 2.95 -61.76 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.45 Total: 25.31 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.07 Total: -48.77 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.26 Total: -51.55 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.85 Total: -32.47 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.71 2.95 -61.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.476 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds