Wall clock time and date at job start Mon Mar 30 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.26946 * 2 1 4 4 C 1.54340 * 110.30666 * 237.92481 * 2 1 3 5 5 C 1.54346 * 102.39264 * 214.63002 * 4 2 1 6 6 O 1.42904 * 110.30213 * 145.26505 * 5 4 2 7 7 C 1.50697 * 110.38667 * 267.37735 * 5 4 2 8 8 H 1.07999 * 120.00227 * 357.24687 * 7 5 4 9 9 C 1.37877 * 119.99785 * 177.24883 * 7 5 4 10 10 N 1.31515 * 120.00440 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99983 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47068 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46981 * 119.99768 * 11 9 7 14 14 H 1.48495 * 109.47421 * 240.00091 * 11 9 7 15 15 C 1.51371 * 105.17073 * 26.34481 * 5 4 2 16 16 C 1.38498 * 130.39222 * 162.81387 * 15 5 4 17 17 C 1.38101 * 120.21560 * 180.27918 * 16 15 5 18 18 C 1.38261 * 119.93197 * 359.40398 * 17 16 15 19 19 C 1.38096 * 119.93402 * 0.61549 * 18 17 16 20 20 C 1.38216 * 109.75529 * 342.81283 * 15 5 4 21 21 H 1.09003 * 109.46964 * 182.07640 * 1 2 3 22 22 H 1.09002 * 109.47541 * 302.07995 * 1 2 3 23 23 H 1.09006 * 109.47332 * 62.08012 * 1 2 3 24 24 H 1.09000 * 110.82712 * 96.40679 * 4 2 1 25 25 H 1.09006 * 110.99244 * 332.93021 * 4 2 1 26 26 H 0.96705 * 113.99858 * 182.79693 * 6 5 4 27 27 H 0.96997 * 120.00447 * 180.02562 * 10 9 7 28 28 H 1.08002 * 119.88925 * 359.97438 * 16 15 5 29 29 H 1.08000 * 120.03724 * 179.72355 * 17 16 15 30 30 H 1.07999 * 120.02943 * 180.29492 * 18 17 16 31 31 H 1.08004 * 119.89426 * 179.66330 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0656 -0.7687 -1.2265 5 6 3.3439 -1.4309 -0.6701 6 8 3.5384 -2.7139 -1.2687 7 6 4.5419 -0.5514 -0.9193 8 1 4.4285 0.3738 -1.4648 9 6 5.7828 -0.9278 -0.4508 10 7 5.9211 -2.0547 0.2130 11 14 7.2680 0.1620 -0.7604 12 1 6.8491 1.3641 -1.5251 13 1 7.8535 0.5814 0.5383 14 1 8.2819 -0.5926 -1.5399 15 6 3.0994 -1.5767 0.8167 16 6 3.7385 -2.3663 1.7581 17 6 3.3339 -2.3388 3.0782 18 6 2.2957 -1.5115 3.4645 19 6 1.6570 -0.7238 2.5272 20 6 2.0572 -0.7545 1.2016 21 1 -0.3633 -1.0270 0.0372 22 1 -0.3634 0.5458 0.8707 23 1 -0.3634 0.4812 -0.9081 24 1 2.3067 -0.0828 -2.0387 25 1 1.3512 -1.5226 -1.5574 26 1 4.3036 -3.1958 -0.9260 27 1 6.7940 -2.3193 0.5429 28 1 4.5527 -3.0093 1.4579 29 1 3.8314 -2.9591 3.8091 30 1 1.9812 -1.4853 4.4973 31 1 0.8424 -0.0818 2.8287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306250786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:27 Heat of formation + Delta-G solvation = -32.911901 kcal Electronic energy + Delta-G solvation = -15048.353096 eV Core-core repulsion = 12680.028547 eV Total energy + Delta-G solvation = -2368.324549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35635 -35.76629 -34.19997 -32.17686 -30.04292 -28.77822 -27.84995 -25.29050 -22.71292 -21.58616 -19.73008 -19.17400 -17.02901 -15.82334 -15.06121 -14.61083 -14.17041 -13.84867 -13.59050 -12.90933 -12.56935 -12.09801 -11.78851 -11.69682 -11.55917 -11.33342 -11.02689 -10.66202 -10.49589 -10.39407 -10.30379 -10.17969 -9.63460 -9.45727 -8.66123 -8.24214 -7.72361 -7.45248 -6.20474 -4.34205 2.39493 2.51744 3.20052 3.28252 3.32226 4.27136 4.85174 5.03110 5.34874 5.51017 5.66553 5.81603 5.91758 6.01182 6.17194 6.20460 6.28806 6.32757 6.50480 6.60176 6.79324 6.88288 6.95513 7.03536 7.12266 7.39071 7.44437 7.57621 7.80635 8.01988 8.08468 8.12704 8.69286 9.33614 9.46097 10.78587 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.013315 C = 0.011041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.373988 B = 2102.379690 C = 2535.471338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.098 4.098 5 C 0.279 3.721 6 O -0.588 6.588 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.070 3.930 10 N -0.890 5.890 11 Si 0.903 3.097 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.281 1.281 15 C -0.058 4.058 16 C -0.074 4.074 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.109 4.109 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.379 0.621 27 H 0.267 0.733 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 1.359 2.715 6.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.136 4.136 5 C 0.239 3.761 6 O -0.396 6.396 7 C -0.561 4.561 8 H 0.083 0.917 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.730 3.270 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.059 4.059 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.144 4.144 20 C -0.109 4.109 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.229 0.771 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.844 1.437 2.449 6.497 hybrid contribution 1.506 0.553 0.534 1.691 sum -4.338 1.990 2.984 5.629 Atomic orbital electron populations 1.21791 0.95619 1.01454 1.00681 1.20498 0.94240 0.98824 0.92685 0.90400 1.22291 0.96880 0.98155 0.96254 1.18317 0.91890 0.82310 0.83541 1.86167 1.53018 1.32554 1.67894 1.21698 0.92114 1.07216 1.35102 0.91657 1.25029 0.99254 0.95344 0.93596 1.69561 1.24195 1.22293 1.36854 0.86362 0.82055 0.80535 0.78040 1.19647 1.20879 1.20719 1.21576 0.91924 0.93215 0.99162 1.21325 0.97791 0.99025 0.91133 1.21024 0.98307 1.00531 0.96589 1.20716 0.98546 0.99288 0.97975 1.20288 1.00808 1.01007 0.92322 1.20473 0.97854 0.98989 0.93607 0.92831 0.93268 0.93007 0.91339 0.92056 0.77121 0.92247 0.83489 0.87707 0.87797 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.98 37.15 0.33 -1.85 16 2 C -0.04 -0.87 3.45 -90.75 -0.31 -1.18 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.10 -2.14 5.81 -25.32 -0.15 -2.28 16 5 C 0.28 7.04 0.92 -91.89 -0.08 6.96 16 6 O -0.59 -15.45 13.03 -35.23 -0.46 -15.90 16 7 C -0.52 -14.04 8.24 -34.44 -0.28 -14.33 16 8 H 0.07 1.74 7.58 -52.49 -0.40 1.34 16 9 C 0.07 1.83 5.25 -17.82 -0.09 1.74 16 10 N -0.89 -23.05 8.11 55.43 0.45 -22.60 16 11 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C -0.06 -1.41 4.81 -104.20 -0.50 -1.91 16 16 C -0.07 -1.76 8.69 -39.54 -0.34 -2.10 16 17 C -0.15 -3.01 10.05 -39.62 -0.40 -3.41 16 18 C -0.15 -2.82 10.05 -39.63 -0.40 -3.21 16 19 C -0.13 -2.48 9.79 -39.54 -0.39 -2.87 16 20 C -0.11 -2.39 5.61 -104.21 -0.58 -2.97 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.43 7.74 -51.93 -0.40 1.03 16 25 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 26 H 0.38 9.92 7.22 45.56 0.33 10.25 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.15 3.60 6.00 -52.49 -0.32 3.28 16 29 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.10 1.71 8.00 -52.48 -0.42 1.29 16 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -27.52 255.00 -7.67 -35.20 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.28 Total: 11.21 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -3.20 Total: -27.42 kcal Atomic # 7 Polarization: -23.05 SS G_CDS: 0.45 Total: -22.60 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.52 -7.67 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.284 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds