Wall clock time and date at job start Mon Mar 30 2020 20:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47488 * 2 1 4 4 O 1.21334 * 120.00206 * 0.02562 * 3 2 1 5 5 C 1.46609 * 119.99950 * 179.97438 * 3 2 1 6 6 C 1.39689 * 120.58836 * 354.37472 * 5 3 2 7 7 C 1.38014 * 120.01754 * 180.27312 * 6 5 3 8 8 C 1.38725 * 121.30672 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.38520 * 180.02562 * 8 7 6 10 10 C 1.37507 * 121.22987 * 359.97438 * 8 7 6 11 11 C 1.40820 * 119.86195 * 0.02562 * 10 8 7 12 12 C 1.40730 * 120.62400 * 179.97438 * 11 10 8 13 13 H 1.07991 * 120.00333 * 147.32926 * 12 11 10 14 14 C 1.40395 * 119.99414 * 327.33600 * 12 11 10 15 15 N 1.30562 * 119.99816 * 165.82402 * 14 12 11 16 16 Si 1.86793 * 120.00383 * 345.81763 * 14 12 11 17 17 H 1.48505 * 109.46891 * 90.10693 * 16 14 12 18 18 H 1.48502 * 109.47458 * 210.10623 * 16 14 12 19 19 H 1.48494 * 109.47440 * 330.11124 * 16 14 12 20 20 H 1.08997 * 109.46802 * 59.99310 * 1 2 3 21 21 H 1.08994 * 109.47421 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46503 * 299.99636 * 1 2 3 23 23 H 1.09003 * 109.46941 * 240.00067 * 2 1 3 24 24 H 1.09005 * 109.47122 * 120.00771 * 2 1 3 25 25 H 1.07993 * 119.99282 * 0.25158 * 6 5 3 26 26 H 1.08000 * 119.34826 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46828 * 269.97364 * 9 8 7 28 28 H 1.09000 * 109.47300 * 29.97127 * 9 8 7 29 29 H 1.08997 * 109.47415 * 149.97788 * 9 8 7 30 30 H 1.07996 * 120.06729 * 180.02562 * 10 8 7 31 31 H 0.96999 * 120.00392 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2441 2.3430 0.0005 5 6 3.4738 1.6885 0.0006 6 6 4.3913 0.6418 0.1190 7 6 5.7455 0.9079 0.1238 8 6 6.2257 2.2046 0.0133 9 6 7.7133 2.4456 0.0228 10 6 5.3698 3.2742 -0.1059 11 6 3.9779 3.0605 -0.1165 12 6 3.0873 4.1434 -0.2371 13 1 2.1472 4.0146 -0.7529 14 6 3.4210 5.3913 0.3129 15 7 2.7454 6.4558 -0.0261 16 14 4.8314 5.5285 1.5299 17 1 6.0944 5.7953 0.7958 18 1 4.5633 6.6423 2.4748 19 1 4.9579 4.2571 2.2865 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5140 0.8900 25 1 4.0408 -0.3759 0.2071 26 1 6.4452 0.0904 0.2164 27 1 8.0498 2.5995 1.0481 28 1 8.2242 1.5812 -0.4013 29 1 7.9419 3.3304 -0.5713 30 1 5.7641 4.2759 -0.1912 31 1 2.9762 7.3181 0.3536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306943095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:54 Heat of formation + Delta-G solvation = -36.980458 kcal Electronic energy + Delta-G solvation = -14407.533232 eV Core-core repulsion = 12039.032257 eV Total energy + Delta-G solvation = -2368.500975 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -38.64514 -37.00953 -33.92374 -32.31846 -31.57334 -30.39995 -26.80537 -25.55204 -23.53477 -21.53179 -20.31780 -18.38788 -17.37950 -15.88668 -15.14180 -14.60662 -14.46437 -13.83762 -13.53264 -13.05298 -12.95272 -12.83737 -12.27261 -11.95914 -11.80857 -11.38832 -11.31925 -11.14578 -10.85663 -10.68664 -10.61767 -10.31835 -10.04392 -9.79488 -9.24818 -8.25204 -7.72752 -7.44424 -7.05514 -4.57535 1.92987 2.63310 3.03670 3.11336 3.24172 3.66223 3.88179 4.46002 5.09924 5.28631 5.59380 5.64395 5.70932 5.78152 5.93555 5.99648 6.12495 6.19773 6.26120 6.37350 6.41140 6.54718 6.61149 6.73772 6.81886 7.10655 7.33309 7.46943 7.66588 7.79424 8.01650 8.29717 8.60921 8.71842 8.98496 9.90114 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.013832 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.861672 B = 2023.815744 C = 3108.218594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.167 4.167 3 C 0.384 3.616 4 O -0.467 6.467 5 C -0.293 4.293 6 C -0.024 4.024 7 C -0.263 4.263 8 C -0.028 4.028 9 C -0.114 4.114 10 C -0.241 4.241 11 C 0.117 3.883 12 C -0.388 4.388 13 H 0.118 0.882 14 C 0.078 3.922 15 N -0.781 5.781 16 Si 0.915 3.085 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.243 1.243 20 H 0.056 0.944 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -7.193 1.427 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.205 4.205 3 C 0.267 3.733 4 O -0.347 6.347 5 C -0.295 4.295 6 C -0.042 4.042 7 C -0.282 4.282 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.260 4.260 11 C 0.113 3.887 12 C -0.414 4.414 13 H 0.135 0.865 14 C -0.144 4.144 15 N -0.404 5.404 16 Si 0.741 3.259 17 H -0.191 1.191 18 H -0.215 1.215 19 H -0.167 1.167 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.286 -6.436 1.413 7.363 hybrid contribution 0.728 0.089 0.485 0.880 sum 4.015 -6.347 1.898 7.746 Atomic orbital electron populations 1.21537 0.94898 1.00314 1.02817 1.21948 0.97094 0.98424 1.03055 1.21833 0.88753 0.89345 0.73400 1.90478 1.58523 1.46892 1.38760 1.20953 0.92933 0.93841 1.21771 1.20905 0.93054 0.96486 0.93791 1.20061 0.94672 0.94979 1.18489 1.19496 0.94060 0.93683 0.95582 1.20822 0.93688 1.01360 1.01231 1.21020 0.93436 0.97136 1.14387 1.18658 0.91197 0.91622 0.87258 1.20095 1.05130 0.90704 1.25475 0.86477 1.26475 0.96738 0.94645 0.96543 1.69549 1.36087 1.00220 1.34504 0.86299 0.80083 0.79355 0.80210 1.19135 1.21541 1.16654 0.92463 0.93283 0.92469 0.89850 0.89929 0.88136 0.88761 0.92153 0.92357 0.92400 0.87732 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.20 37.16 0.34 -1.81 16 2 C -0.17 -2.81 5.12 -27.88 -0.14 -2.95 16 3 C 0.38 8.65 7.08 -30.94 -0.22 8.44 16 4 O -0.47 -12.16 13.42 5.51 0.07 -12.09 16 5 C -0.29 -6.94 6.06 -102.59 -0.62 -7.56 16 6 C -0.02 -0.49 9.47 -39.12 -0.37 -0.86 16 7 C -0.26 -5.31 9.61 -39.48 -0.38 -5.69 16 8 C -0.03 -0.59 5.87 -104.71 -0.61 -1.20 16 9 C -0.11 -1.92 9.98 36.00 0.36 -1.56 16 10 C -0.24 -5.78 6.81 -38.87 -0.26 -6.04 16 11 C 0.12 3.05 5.24 -104.59 -0.55 2.50 16 12 C -0.39 -10.86 8.39 -37.83 -0.32 -11.18 16 13 H 0.12 3.58 6.18 -52.49 -0.32 3.26 16 14 C 0.08 2.08 5.45 -17.28 -0.09 1.98 16 15 N -0.78 -20.83 13.91 55.57 0.77 -20.06 16 16 Si 0.91 20.81 24.53 -169.99 -4.17 16.64 16 17 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.24 -5.74 6.96 56.52 0.39 -5.34 16 20 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.94 8.10 -51.93 -0.42 0.51 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 25 H 0.10 1.70 7.02 -52.49 -0.37 1.33 16 26 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.11 2.48 4.71 -52.49 -0.25 2.23 16 31 H 0.29 6.90 8.29 -40.82 -0.34 6.56 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -29.00 259.70 -6.18 -35.18 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.90 Total: 2.36 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.87 Total: -25.95 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.77 Total: -20.06 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.17 Total: 16.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.00 -6.18 -35.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306943095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds