Wall clock time and date at job start Mon Mar 30 2020 20:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47488 * 2 1 4 4 O 1.21334 * 120.00206 * 0.02562 * 3 2 1 5 5 C 1.46609 * 119.99950 * 179.97438 * 3 2 1 6 6 C 1.39689 * 120.58836 * 354.37472 * 5 3 2 7 7 C 1.38014 * 120.01754 * 180.27312 * 6 5 3 8 8 C 1.38725 * 121.30672 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.38520 * 180.02562 * 8 7 6 10 10 C 1.37507 * 121.22987 * 359.97438 * 8 7 6 11 11 C 1.40820 * 119.86195 * 0.02562 * 10 8 7 12 12 C 1.40730 * 120.62400 * 179.97438 * 11 10 8 13 13 H 1.07991 * 120.00333 * 147.32926 * 12 11 10 14 14 C 1.40395 * 119.99414 * 327.33600 * 12 11 10 15 15 N 1.30562 * 119.99816 * 165.82402 * 14 12 11 16 16 Si 1.86793 * 120.00383 * 345.81763 * 14 12 11 17 17 H 1.48505 * 109.46891 * 90.10693 * 16 14 12 18 18 H 1.48502 * 109.47458 * 210.10623 * 16 14 12 19 19 H 1.48494 * 109.47440 * 330.11124 * 16 14 12 20 20 H 1.08997 * 109.46802 * 59.99310 * 1 2 3 21 21 H 1.08994 * 109.47421 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46503 * 299.99636 * 1 2 3 23 23 H 1.09003 * 109.46941 * 240.00067 * 2 1 3 24 24 H 1.09005 * 109.47122 * 120.00771 * 2 1 3 25 25 H 1.07993 * 119.99282 * 0.25158 * 6 5 3 26 26 H 1.08000 * 119.34826 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46828 * 269.97364 * 9 8 7 28 28 H 1.09000 * 109.47300 * 29.97127 * 9 8 7 29 29 H 1.08997 * 109.47415 * 149.97788 * 9 8 7 30 30 H 1.07996 * 120.06729 * 180.02562 * 10 8 7 31 31 H 0.96999 * 120.00392 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2441 2.3430 0.0005 5 6 3.4738 1.6885 0.0006 6 6 4.3913 0.6418 0.1190 7 6 5.7455 0.9079 0.1238 8 6 6.2257 2.2046 0.0133 9 6 7.7133 2.4456 0.0228 10 6 5.3698 3.2742 -0.1059 11 6 3.9779 3.0605 -0.1165 12 6 3.0873 4.1434 -0.2371 13 1 2.1472 4.0146 -0.7529 14 6 3.4210 5.3913 0.3129 15 7 2.7454 6.4558 -0.0261 16 14 4.8314 5.5285 1.5299 17 1 6.0944 5.7953 0.7958 18 1 4.5633 6.6423 2.4748 19 1 4.9579 4.2571 2.2865 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5140 0.8900 25 1 4.0408 -0.3759 0.2071 26 1 6.4452 0.0904 0.2164 27 1 8.0498 2.5995 1.0481 28 1 8.2242 1.5812 -0.4013 29 1 7.9419 3.3304 -0.5713 30 1 5.7641 4.2759 -0.1912 31 1 2.9762 7.3181 0.3536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306943095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:54 Heat of formation + Delta-G solvation = -54.604531 kcal Electronic energy + Delta-G solvation = -14408.297469 eV Core-core repulsion = 12039.032257 eV Total energy + Delta-G solvation = -2369.265212 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41778 -38.76240 -35.78810 -33.87217 -33.17024 -32.13847 -28.33801 -27.37641 -25.03330 -23.22842 -22.01684 -20.07521 -19.28636 -17.59316 -16.94162 -16.20132 -16.11367 -15.50137 -15.20307 -14.69342 -14.55045 -14.48166 -13.89166 -13.68680 -13.23282 -12.95659 -12.77551 -12.73138 -12.47416 -12.33815 -12.02142 -11.95545 -11.85849 -11.60619 -11.04226 -10.03290 -9.49638 -9.21421 -8.96419 -6.56122 0.17151 0.85300 1.18398 1.32079 1.41501 1.93491 2.04817 2.60137 3.46438 3.55495 4.19107 4.24174 4.29367 4.35118 4.53003 4.60541 4.76277 4.81822 4.88036 4.97867 5.00969 5.10520 5.12897 5.21474 5.31028 5.35910 5.60768 5.74754 5.88714 6.03024 6.22691 6.37094 6.70052 6.75913 7.24436 8.06674 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.013832 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.861672 B = 2023.815744 C = 3108.218594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.373 3.627 4 O -0.516 6.516 5 C -0.318 4.318 6 C -0.019 4.019 7 C -0.248 4.248 8 C -0.028 4.028 9 C -0.114 4.114 10 C -0.268 4.268 11 C 0.099 3.901 12 C -0.440 4.440 13 H 0.068 0.932 14 C 0.039 3.961 15 N -0.832 5.832 16 Si 0.972 3.028 17 H -0.245 1.245 18 H -0.274 1.274 19 H -0.257 1.257 20 H 0.037 0.963 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.111 0.889 24 H 0.114 0.886 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 -10.817 2.322 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.193 4.193 3 C 0.258 3.742 4 O -0.398 6.398 5 C -0.321 4.321 6 C -0.037 4.037 7 C -0.267 4.267 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.287 4.287 11 C 0.095 3.905 12 C -0.468 4.468 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.458 5.458 16 Si 0.794 3.206 17 H -0.170 1.170 18 H -0.201 1.201 19 H -0.181 1.181 20 H 0.057 0.943 21 H 0.109 0.891 22 H 0.059 0.941 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.166 0.834 26 H 0.157 0.843 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.151 -10.073 2.296 12.024 hybrid contribution -0.088 0.883 0.163 0.902 sum 6.063 -9.190 2.458 11.281 Atomic orbital electron populations 1.21548 0.94316 1.02402 1.01176 1.21946 0.97620 0.94102 1.05671 1.22769 0.88322 0.91751 0.71368 1.90484 1.59474 1.49246 1.40583 1.21512 0.94734 0.94028 1.21809 1.21392 0.92789 0.97682 0.91793 1.20707 0.95386 0.95743 1.14881 1.20100 0.96402 0.93352 0.92984 1.20914 0.90401 1.03020 1.02746 1.21105 0.92914 0.98251 1.16397 1.19008 0.92207 0.92395 0.86845 1.19880 1.04491 0.93041 1.29377 0.91394 1.27175 0.99015 0.93889 0.97660 1.69585 1.38479 1.00883 1.36823 0.85443 0.78095 0.78830 0.78211 1.17016 1.20085 1.18067 0.94339 0.89115 0.94124 0.87060 0.86793 0.83434 0.84327 0.90354 0.89253 0.92131 0.88248 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.20 71.98 0.66 -3.38 16 2 C -0.16 -4.77 5.12 29.85 0.15 -4.62 16 3 C 0.37 16.91 7.08 27.87 0.20 17.10 16 4 O -0.52 -28.59 13.42 -3.20 -0.04 -28.64 16 5 C -0.32 -14.91 6.06 -18.55 -0.11 -15.03 16 6 C -0.02 -0.68 9.47 22.57 0.21 -0.47 16 7 C -0.25 -8.67 9.61 22.33 0.21 -8.46 16 8 C -0.03 -1.08 5.87 -19.92 -0.12 -1.20 16 9 C -0.11 -3.27 9.98 71.24 0.71 -2.56 16 10 C -0.27 -12.68 6.81 22.73 0.15 -12.53 16 11 C 0.10 5.31 5.24 -19.85 -0.10 5.20 16 12 C -0.44 -26.60 8.39 23.40 0.20 -26.40 16 13 H 0.07 4.63 6.18 -2.92 -0.02 4.62 16 14 C 0.04 2.21 5.45 85.41 0.47 2.67 16 15 N -0.83 -47.82 13.91 21.90 0.30 -47.52 16 16 Si 0.97 44.20 24.53 68.60 1.68 45.88 16 17 H -0.25 -10.18 6.54 99.48 0.65 -9.53 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.26 -12.00 6.96 99.48 0.69 -11.31 16 20 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 21 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 23 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.11 2.83 7.93 -2.38 -0.02 2.81 16 25 H 0.15 3.98 7.02 -2.91 -0.02 3.96 16 26 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 2.02 8.07 -2.39 -0.02 2.00 16 29 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 30 H 0.10 4.71 4.71 -2.91 -0.01 4.69 16 31 H 0.30 15.16 8.29 -92.71 -0.77 14.39 16 Total: -1.00 -70.21 259.70 5.63 -64.58 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.05 Total: 15.34 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.63 Total: -49.65 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.30 Total: -47.52 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal Total: -70.21 5.63 -64.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306943095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.979 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds