Wall clock time and date at job start Mon Mar 30 2020 20:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99867 * 2 1 4 4 O 1.42901 * 109.46738 * 135.00230 * 3 2 1 5 5 C 1.42902 * 114.00031 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47264 * 179.97438 * 5 4 3 7 7 C 1.38632 * 119.75213 * 269.72235 * 6 5 4 8 8 C 1.37614 * 120.25123 * 179.71891 * 7 6 5 9 9 C 1.40719 * 119.74124 * 0.57305 * 8 7 6 10 10 C 1.41395 * 120.24246 * 179.67718 * 9 8 7 11 11 H 1.07998 * 119.99970 * 155.30784 * 10 9 8 12 12 C 1.39951 * 120.00207 * 335.31835 * 10 9 8 13 13 N 1.30818 * 119.99753 * 342.22830 * 12 10 9 14 14 Si 1.86797 * 120.00021 * 162.22875 * 12 10 9 15 15 H 1.48500 * 109.47048 * 94.66426 * 14 12 10 16 16 H 1.48498 * 109.47252 * 214.66382 * 14 12 10 17 17 H 1.48496 * 109.47461 * 334.66371 * 14 12 10 18 18 C 1.40704 * 119.51466 * 359.70404 * 9 8 7 19 19 C 1.37620 * 119.74516 * 359.97438 * 18 9 8 20 20 H 1.08000 * 119.99618 * 179.97438 * 1 2 3 21 21 H 1.07999 * 120.00015 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00015 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47192 * 15.00511 * 3 2 1 24 24 H 1.08991 * 109.47537 * 255.00019 * 3 2 1 25 25 H 1.08998 * 109.47199 * 59.99761 * 5 4 3 26 26 H 1.09001 * 109.47096 * 299.99734 * 5 4 3 27 27 H 1.08005 * 119.87401 * 359.97438 * 7 6 5 28 28 H 1.07997 * 120.13194 * 180.28480 * 8 7 6 29 29 H 0.97004 * 119.99893 * 180.02562 * 13 12 10 30 30 H 1.08007 * 120.13445 * 179.97438 * 18 9 8 31 31 H 1.08000 * 119.87742 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 4.9934 2.2571 2.0629 7 6 4.7534 2.6064 3.3828 8 6 5.7354 2.4426 4.3329 9 6 6.9910 1.9297 3.9578 10 6 8.0099 1.7635 4.9240 11 1 8.7928 1.0371 4.7636 12 6 8.0037 2.5401 6.0882 13 7 7.2908 3.6357 6.1398 14 14 9.0134 2.0121 7.5685 15 1 10.3322 2.6940 7.5367 16 1 8.2952 2.3813 8.8147 17 1 9.2155 0.5415 7.5308 18 6 7.2252 1.5839 2.6142 19 6 6.2263 1.7500 1.6823 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8501 -0.9353 -0.0004 23 1 1.3855 2.1161 0.2661 24 1 2.4755 1.4868 -0.9925 25 1 3.2679 3.2693 1.3206 26 1 4.3581 2.6408 0.0618 27 1 3.7907 3.0047 3.6674 28 1 5.5449 2.7111 5.3614 29 1 7.2867 4.1742 6.9466 30 1 8.1853 1.1898 2.3152 31 1 6.4036 1.4849 0.6504 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399211350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:38 Heat of formation + Delta-G solvation = -17.039448 kcal Electronic energy + Delta-G solvation = -13586.473742 eV Core-core repulsion = 11218.837475 eV Total energy + Delta-G solvation = -2367.636268 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.11011 -36.99521 -34.08122 -33.40788 -30.47759 -29.26453 -27.12912 -25.42922 -23.40679 -20.98753 -20.20693 -19.66413 -17.30460 -16.31702 -15.74150 -15.25366 -15.10410 -14.19597 -13.85398 -13.48148 -13.01554 -12.56712 -12.11702 -11.92551 -11.82610 -11.45010 -11.16984 -11.01177 -10.83810 -10.46967 -10.43670 -9.67531 -9.58245 -9.37064 -9.15149 -9.03990 -7.45773 -7.34532 -6.78383 -4.37028 2.16645 2.71228 3.06417 3.09598 3.09814 3.16640 3.92157 4.28156 4.69739 5.11639 5.18715 5.47891 5.56115 5.72536 5.78636 5.82821 5.93808 6.17601 6.38081 6.41166 6.55104 6.67791 6.95246 7.06167 7.28392 7.36569 7.61379 7.67023 7.87651 8.04873 8.12420 8.28951 8.63198 8.88050 8.96757 10.16251 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.057980 B = 0.005276 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.807528 B = 5305.656345 C = 5407.021086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C 0.082 3.918 4 O -0.380 6.380 5 C 0.128 3.872 6 C -0.224 4.224 7 C -0.080 4.080 8 C -0.169 4.169 9 C 0.116 3.884 10 C -0.461 4.461 11 H 0.079 0.921 12 C 0.076 3.924 13 N -0.791 5.791 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.230 4.230 19 C -0.069 4.069 20 H 0.101 0.899 21 H 0.095 0.905 22 H 0.115 0.885 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.281 0.719 30 H 0.093 0.907 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -2.007 -6.185 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.159 4.159 3 C 0.006 3.994 4 O -0.300 6.300 5 C 0.053 3.947 6 C -0.225 4.225 7 C -0.098 4.098 8 C -0.189 4.189 9 C 0.113 3.887 10 C -0.491 4.491 11 H 0.097 0.903 12 C -0.142 4.142 13 N -0.416 5.416 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.250 4.250 19 C -0.088 4.088 20 H 0.119 0.881 21 H 0.114 0.886 22 H 0.133 0.867 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.073 -1.950 -5.914 9.424 hybrid contribution 0.373 0.121 0.512 0.645 sum -6.700 -1.829 -5.402 8.798 Atomic orbital electron populations 1.23765 0.95594 1.01901 1.01732 1.22850 0.95608 0.98636 0.98761 1.21470 0.89801 0.95166 0.92989 1.88119 1.43769 1.38685 1.59427 1.21119 0.90971 0.85706 0.96946 1.18755 0.94391 1.15242 0.94138 1.20528 0.97389 0.99239 0.92680 1.21290 0.92845 1.05967 0.98774 1.17654 0.92015 0.87922 0.91066 1.19631 1.09327 1.18486 1.01607 0.90336 1.25934 0.95064 0.93407 0.99778 1.69830 1.33616 1.09717 1.28432 0.86308 0.79876 0.80449 0.80162 1.19552 1.19994 1.18367 1.20954 0.98186 1.12368 0.93472 1.20371 0.93304 0.97952 0.97158 0.88108 0.88632 0.86701 0.93416 0.92965 0.94271 0.94336 0.89470 0.86397 0.90824 0.88885 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 14.31 29.01 0.42 -1.64 16 2 C -0.14 -1.81 9.89 -36.03 -0.36 -2.16 16 3 C 0.08 1.18 6.35 36.01 0.23 1.41 16 4 O -0.38 -7.23 10.31 -35.23 -0.36 -7.60 16 5 C 0.13 2.43 6.05 36.00 0.22 2.65 16 6 C -0.22 -5.17 5.53 -104.33 -0.58 -5.75 16 7 C -0.08 -1.95 9.67 -39.66 -0.38 -2.33 16 8 C -0.17 -4.52 8.70 -38.87 -0.34 -4.86 16 9 C 0.12 3.16 5.57 -106.83 -0.60 2.57 16 10 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 11 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 13 N -0.79 -20.52 10.97 55.55 0.61 -19.91 16 14 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 18 C -0.23 -5.82 9.80 -38.88 -0.38 -6.20 16 19 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 20 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 21 H 0.10 0.92 7.90 -52.49 -0.41 0.51 16 22 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 23 H 0.05 0.62 7.86 -51.93 -0.41 0.22 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.09 1.94 8.06 -52.48 -0.42 1.51 16 28 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 29 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 30 H 0.09 2.20 8.06 -52.48 -0.42 1.77 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 274.65 15.07 4.14 4.14 Total: -1.00 -28.31 274.65 -7.30 -35.61 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.07 Total: 3.35 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -2.58 Total: -29.22 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.36 Total: -7.60 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.31 -7.30 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399211350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.571 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds