Wall clock time and date at job start Mon Mar 30 2020 20:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 O 1.42905 * 109.46817 * 300.00159 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 N 1.28987 * 124.90344 * 74.69509 * 12 9 7 14 14 C 1.31832 * 117.13371 * 179.77096 * 13 12 9 15 15 C 1.33759 * 114.45883 * 0.51617 * 14 13 12 16 16 Cl 1.73595 * 126.04200 * 179.73071 * 15 14 13 17 17 S 1.70969 * 124.89934 * 254.99764 * 12 9 7 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 0.96699 * 113.99284 * 299.99770 * 11 9 7 20 20 H 1.07996 * 122.77007 * 180.27095 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0018 13 7 2.9215 -4.0236 1.0228 14 6 3.7313 -5.0500 0.8533 15 6 3.7298 -5.5580 -0.3841 16 17 4.6814 -6.8999 -0.9384 17 16 2.5912 -4.6245 -1.3519 18 1 -0.4850 -0.8401 -0.0004 19 1 0.9210 -2.5290 1.9983 20 1 4.3480 -5.4453 1.6468 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223304306.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:10 Heat of formation + Delta-G solvation = -42.525548 kcal Electronic energy + Delta-G solvation = -10541.271259 eV Core-core repulsion = 8275.757753 eV Total energy + Delta-G solvation = -2265.513506 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 218.986 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.85725 -38.13732 -37.66835 -34.39542 -31.72903 -28.91071 -26.31201 -24.29112 -21.07415 -19.71039 -19.49897 -17.64230 -16.59526 -15.85331 -15.76458 -15.69418 -14.90080 -14.52859 -14.22290 -13.34921 -13.10603 -12.65119 -12.46491 -11.96805 -11.92503 -11.92132 -10.92326 -10.70444 -10.36340 -10.34412 -9.78210 -8.68086 -6.55746 -0.51186 -0.21201 0.53415 1.08159 1.55109 1.62283 1.68948 1.81469 2.53804 3.08513 3.22214 3.84223 4.03393 4.17560 4.79592 5.09376 5.61033 6.01114 6.47026 6.62420 6.91408 7.35269 8.69362 Molecular weight = 218.99amu Principal moments of inertia in cm(-1) A = 0.054432 B = 0.008040 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.277624 B = 3481.802503 C = 3634.017191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.006 4.006 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.643 4.643 8 H 0.046 0.954 9 C 0.282 3.718 10 H 0.060 0.940 11 O -0.575 6.575 12 C 0.050 3.950 13 N -0.490 5.490 14 C 0.054 3.946 15 C -0.212 4.212 16 Cl 0.017 6.983 17 S 0.182 5.818 18 H 0.271 0.729 19 H 0.373 0.627 20 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.139 -10.274 -2.073 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.210 4.210 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.682 4.682 8 H 0.065 0.935 9 C 0.221 3.779 10 H 0.078 0.922 11 O -0.381 6.381 12 C -0.227 4.227 13 N -0.205 5.205 14 C -0.100 4.100 15 C -0.360 4.360 16 Cl 0.046 6.954 17 S 0.436 5.564 18 H 0.081 0.919 19 H 0.220 0.780 20 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.119 -8.593 -3.131 11.590 hybrid contribution 1.114 -2.204 1.057 2.686 sum 8.232 -10.797 -2.074 13.735 Atomic orbital electron populations 1.70761 1.07759 1.31460 1.44508 1.27268 0.96427 1.06004 0.91301 0.82912 0.74113 0.71156 0.77809 1.19952 1.19789 1.20328 1.22458 0.94322 0.92032 1.59387 0.93519 1.18193 0.85693 0.87535 0.86466 0.92247 1.86410 1.38716 1.96135 1.16794 1.28438 1.00888 1.00965 0.92364 1.66349 1.08530 1.14275 1.31375 1.22324 0.98754 0.92585 0.96314 1.26897 1.08135 1.02701 0.98227 1.98341 1.68371 1.39998 1.88726 1.83771 1.34854 1.23230 1.14593 0.91851 0.77998 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.81 13.53 21.45 0.29 -53.52 14 2 C -0.01 -0.36 5.40 84.65 0.46 0.10 14 3 Si 1.12 48.53 29.90 68.60 2.05 50.58 14 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 14 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 14 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 14 7 C -0.64 -35.04 8.75 25.60 0.22 -34.82 14 8 H 0.05 2.58 7.74 -2.91 -0.02 2.56 14 9 C 0.28 14.12 2.94 29.10 0.09 14.21 14 10 H 0.06 3.09 8.01 -2.38 -0.02 3.07 14 11 O -0.58 -29.28 12.00 -148.98 -1.79 -31.07 14 12 C 0.05 2.16 6.21 88.52 0.55 2.71 14 13 N -0.49 -19.84 10.38 -191.36 -1.99 -21.82 14 14 C 0.05 1.73 11.32 83.67 0.95 2.68 14 15 C -0.21 -6.37 7.21 66.80 0.48 -5.89 14 16 Cl 0.02 0.41 29.31 -2.72 -0.08 0.33 14 17 S 0.18 6.17 23.18 -56.49 -1.31 4.86 14 18 H 0.27 16.38 6.47 -92.71 -0.60 15.78 14 19 H 0.37 17.80 8.89 -74.06 -0.66 17.15 14 20 H 0.21 5.12 8.06 -2.91 -0.02 5.10 14 Total: -1.00 -60.85 220.60 0.72 -60.13 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.80 Total: 11.53 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 2.75 Total: -21.01 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.70 Total: -75.34 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.79 Total: -31.07 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.31 Total: 4.86 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -0.08 Total: 0.33 kcal Total: -60.85 0.72 -60.13 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223304306.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.603 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds