Wall clock time and date at job start Mon Mar 30 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.38404 * 300.21174 * 11 10 9 13 13 C 1.52640 * 109.38311 * 180.52812 * 11 10 9 14 14 S 1.81176 * 109.98984 * 172.98923 * 13 11 10 15 15 C 1.81176 * 103.31285 * 62.61787 * 14 13 11 16 16 C 1.52640 * 109.99478 * 297.38293 * 15 14 13 17 17 S 1.81175 * 109.99042 * 66.84821 * 16 15 14 18 18 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 19 19 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 20 20 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 21 21 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 22 22 H 1.08994 * 109.38738 * 293.14956 * 13 11 10 23 23 H 1.08995 * 109.38309 * 52.83841 * 13 11 10 24 24 H 1.08997 * 109.38658 * 177.22909 * 15 14 13 25 25 H 1.09001 * 109.30055 * 57.48964 * 15 14 13 26 26 H 1.09003 * 109.38234 * 306.69531 * 16 15 14 27 27 H 1.08993 * 109.39131 * 187.01003 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4350 -4.7587 0.8861 13 6 1.8289 -6.1404 0.0110 14 16 0.6757 -7.5223 0.2183 15 6 -0.3640 -7.4237 -1.2622 16 6 -1.1292 -6.1030 -1.2755 17 16 0.0240 -4.7211 -1.4827 18 1 -0.4850 -0.8401 -0.0004 19 1 0.3556 -2.3880 -0.0016 20 1 2.6853 -3.7142 -0.8912 21 1 2.6841 -3.7150 0.8887 22 1 2.3670 -6.2563 -0.9297 23 1 2.5416 -6.1373 0.8357 24 1 -1.0724 -8.2520 -1.2626 25 1 0.2659 -7.4858 -2.1496 26 1 -1.6673 -5.9871 -0.3347 27 1 -1.8419 -6.1060 -2.1001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229603132.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:16 Heat of formation + Delta-G solvation = -15.341317 kcal Electronic energy + Delta-G solvation = -11019.081539 eV Core-core repulsion = 9028.456725 eV Total energy + Delta-G solvation = -1990.624814 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 219.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.70729 -35.24647 -34.02150 -31.92892 -27.35506 -24.95838 -24.76122 -23.00640 -19.40016 -18.37754 -17.56088 -16.74166 -16.35453 -15.92988 -15.38313 -15.15469 -14.86516 -14.48525 -13.89985 -13.70798 -13.65797 -12.79230 -12.67655 -12.49415 -11.88330 -11.76679 -11.37738 -11.23519 -10.97294 -10.63969 -9.15915 -9.04533 -8.74434 -8.40640 -5.34958 0.46496 0.60255 1.29497 1.52465 1.58234 1.69550 1.83633 2.70588 3.33379 3.40114 3.61627 3.74028 3.95634 3.99136 4.06177 4.27064 4.32669 4.54730 4.57703 4.69921 4.72911 4.90328 5.55400 6.48740 7.06999 7.97221 8.08377 9.11046 Molecular weight = 219.04amu Principal moments of inertia in cm(-1) A = 0.063976 B = 0.007087 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.560354 B = 3949.921951 C = 4228.461075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.102 4.102 3 Si 1.132 2.868 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.179 3.821 11 C -0.046 4.046 12 H 0.086 0.914 13 C -0.070 4.070 14 S -0.269 6.269 15 C -0.077 4.077 16 C -0.087 4.087 17 S -0.280 6.280 18 H 0.244 0.756 19 H 0.366 0.634 20 H 0.026 0.974 21 H 0.044 0.956 22 H 0.102 0.898 23 H 0.128 0.872 24 H 0.142 0.858 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -16.273 -1.850 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.293 4.293 3 Si 0.957 3.043 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.219 1.219 7 C -0.470 4.470 8 H 0.086 0.914 9 N -0.398 5.398 10 C 0.049 3.951 11 C -0.177 4.177 12 H 0.104 0.896 13 C -0.221 4.221 14 S -0.040 6.040 15 C -0.227 4.227 16 C -0.237 4.237 17 S -0.053 6.053 18 H 0.054 0.946 19 H 0.199 0.801 20 H 0.044 0.956 21 H 0.062 0.938 22 H 0.120 0.880 23 H 0.146 0.854 24 H 0.160 0.840 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.936 -14.689 -1.859 14.836 hybrid contribution -0.284 -1.494 0.046 1.521 sum 0.652 -16.183 -1.812 16.297 Atomic orbital electron populations 1.70942 1.07221 1.27957 1.55891 1.27261 0.97096 1.04691 1.00239 0.82574 0.73489 0.71351 0.76921 1.20935 1.19833 1.21937 1.20411 0.92405 0.87007 1.47224 0.91434 1.42559 1.05080 1.01482 1.90649 1.20521 0.92586 0.83086 0.98857 1.23405 0.98801 0.97813 0.97678 0.89579 1.23468 0.98866 0.91664 1.08096 1.86705 1.41124 1.41444 1.34756 1.23587 1.00822 1.00401 0.97897 1.23646 0.99158 0.93097 1.07763 1.87622 1.41577 1.43807 1.32322 0.94555 0.80105 0.95584 0.93822 0.87971 0.85396 0.83996 0.88096 0.88970 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.46 13.70 21.65 0.30 -62.16 15 2 C -0.10 -6.03 5.50 84.86 0.47 -5.56 15 3 Si 1.13 52.87 29.92 68.60 2.05 54.93 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 15 7 C -0.34 -19.62 9.99 84.03 0.84 -18.78 15 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 15 9 N -0.75 -39.32 5.31 -343.47 -1.82 -41.14 15 10 C 0.18 7.27 5.68 86.38 0.49 7.76 15 11 C -0.05 -1.50 2.50 30.48 0.08 -1.43 15 12 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 13 C -0.07 -1.77 5.53 71.86 0.40 -1.37 15 14 S -0.27 -6.14 22.05 -56.49 -1.25 -7.38 15 15 C -0.08 -1.42 6.25 71.86 0.45 -0.97 15 16 C -0.09 -1.94 6.25 71.86 0.45 -1.49 15 17 S -0.28 -9.38 20.60 -56.49 -1.16 -10.54 15 18 H 0.24 15.78 6.77 -92.71 -0.63 15.15 15 19 H 0.37 20.07 6.00 -92.71 -0.56 19.52 15 20 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.10 2.46 8.14 -2.40 -0.02 2.44 15 23 H 0.13 2.89 8.13 -2.40 -0.02 2.87 15 24 H 0.14 1.83 8.14 -2.40 -0.02 1.81 15 25 H 0.10 1.81 8.14 -2.40 -0.02 1.79 15 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.13 2.46 8.14 -2.40 -0.02 2.44 15 Total: -1.00 -68.42 248.47 2.02 -66.39 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.74 Total: 21.74 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.17 Total: -21.84 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -1.53 Total: -103.30 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.05 Total: 54.93 kcal Atomic # 16 Polarization: -15.51 SS G_CDS: -2.41 Total: -17.92 kcal Total: -68.42 2.02 -66.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229603132.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.053 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds