Wall clock time and date at job start Mon Mar 30 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39898 * 109.47662 * 2 1 4 4 F 1.39899 * 109.46943 * 239.99973 * 2 1 3 5 5 C 1.53009 * 109.46989 * 120.00240 * 2 1 3 6 6 H 1.09004 * 109.46720 * 303.19482 * 5 2 1 7 7 C 1.50693 * 109.47095 * 63.19717 * 5 2 1 8 8 H 1.08001 * 120.00007 * 62.28705 * 7 5 2 9 9 C 1.37879 * 120.00083 * 242.28500 * 7 5 2 10 10 N 1.31513 * 120.00326 * 188.11024 * 9 7 5 11 11 Si 1.86800 * 120.00108 * 8.10963 * 9 7 5 12 12 H 1.48498 * 109.47087 * 270.70773 * 11 9 7 13 13 H 1.48500 * 109.46731 * 30.70271 * 11 9 7 14 14 H 1.48496 * 109.47299 * 150.70612 * 11 9 7 15 15 C 1.53002 * 109.46874 * 183.20059 * 5 2 1 16 16 C 1.54267 * 110.02718 * 183.66502 * 15 5 2 17 17 C 1.54893 * 104.19254 * 217.10687 * 16 15 5 18 18 C 1.54883 * 102.74930 * 37.93886 * 17 16 15 19 19 C 1.53874 * 110.03347 * 66.49737 * 15 5 2 20 20 H 1.09005 * 109.47067 * 300.00124 * 1 2 3 21 21 H 1.09007 * 109.46937 * 59.99521 * 1 2 3 22 22 H 1.08996 * 109.47349 * 180.02562 * 1 2 3 23 23 H 0.96995 * 120.00603 * 179.97438 * 10 9 7 24 24 H 1.08994 * 110.01416 * 305.10292 * 15 5 2 25 25 H 1.09005 * 110.48586 * 335.77553 * 16 15 5 26 26 H 1.08996 * 110.48856 * 98.42691 * 16 15 5 27 27 H 1.09005 * 110.75104 * 279.62252 * 17 16 15 28 28 H 1.09000 * 110.75891 * 156.25929 * 17 16 15 29 29 H 1.09001 * 110.48589 * 203.38169 * 18 17 16 30 30 H 1.09002 * 110.60090 * 80.79741 * 18 17 16 31 31 H 1.09002 * 110.02752 * 238.56491 * 19 15 5 32 32 H 1.08994 * 110.03190 * 359.94934 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 1 1.6306 -0.2416 2.1383 7 6 1.6034 -2.1631 1.2102 8 1 1.9454 -2.8096 0.4155 9 6 0.7673 -2.6570 2.1891 10 7 0.5138 -3.9461 2.2484 11 14 -0.0054 -1.4952 3.4310 12 1 0.8966 -1.3509 4.6018 13 1 -0.2158 -0.1667 2.8016 14 1 -1.3112 -2.0442 3.8768 15 6 3.5679 -0.6520 1.2902 16 6 4.1011 -1.4537 2.4955 17 6 5.3068 -0.6230 3.0008 18 6 4.8188 0.8353 2.8156 19 6 4.0242 0.8034 1.4937 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.0740 -4.2937 2.9372 24 1 3.9842 -1.0478 0.3639 25 1 3.3385 -1.5295 3.2707 26 1 4.4261 -2.4452 2.1805 27 1 6.1903 -0.8150 2.3920 28 1 5.5073 -0.8327 4.0514 29 1 5.6676 1.5142 2.7341 30 1 4.1727 1.1314 3.6420 31 1 4.6628 1.1135 0.6666 32 1 3.1572 1.4604 1.5624 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257967909.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:41 Heat of formation + Delta-G solvation = -128.815106 kcal Electronic energy + Delta-G solvation = -16133.561390 eV Core-core repulsion = 13342.681731 eV Total energy + Delta-G solvation = -2790.879659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.97554 -45.91080 -37.70711 -33.76337 -31.53063 -29.25000 -28.01176 -25.87219 -23.40294 -20.30856 -19.97352 -18.85922 -17.46822 -15.99871 -15.57007 -15.36907 -14.97827 -14.25323 -13.88862 -13.05264 -12.78553 -12.62425 -12.50370 -12.31304 -11.98083 -11.68243 -11.53058 -11.17458 -11.01478 -10.75050 -10.43341 -10.31820 -10.10536 -10.00412 -9.82635 -9.38708 -9.33410 -9.21533 -8.62011 -6.22971 -4.22837 3.16040 3.23823 3.27245 4.26269 4.80907 5.04287 5.24245 5.34725 5.36918 5.52938 5.59960 5.64676 6.05660 6.11662 6.16498 6.27894 6.31516 6.38442 6.39665 6.50425 6.55074 6.70248 6.78990 6.81132 6.95133 7.01604 7.16124 7.34285 7.56284 8.35635 8.87203 9.38002 10.89318 Molecular weight = 218.12amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.016769 C = 0.012293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.768890 B = 1669.305890 C = 2277.191966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.279 3.721 3 F -0.223 7.223 4 F -0.206 7.206 5 C -0.010 4.010 6 H 0.058 0.942 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.887 5.887 11 Si 0.860 3.140 12 H -0.273 1.273 13 H -0.260 1.260 14 H -0.286 1.286 15 C -0.080 4.080 16 C -0.094 4.094 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.134 4.134 20 H 0.074 0.926 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.266 0.734 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 7.976 0.463 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.243 3.757 3 F -0.204 7.204 4 F -0.188 7.188 5 C -0.030 4.030 6 H 0.077 0.923 7 C -0.543 4.543 8 H 0.100 0.900 9 C -0.122 4.122 10 N -0.523 5.523 11 Si 0.688 3.312 12 H -0.199 1.199 13 H -0.185 1.185 14 H -0.212 1.212 15 C -0.099 4.099 16 C -0.132 4.132 17 C -0.168 4.168 18 C -0.162 4.162 19 C -0.171 4.171 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.119 0.881 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.313 7.824 0.531 8.513 hybrid contribution -0.453 0.564 0.570 0.921 sum 2.860 8.388 1.101 8.930 Atomic orbital electron populations 1.22686 0.93315 1.05862 1.02428 1.21953 0.93145 0.73991 0.86638 1.92829 1.90723 1.40028 1.96869 1.92886 1.90610 1.81268 1.54001 1.20260 0.93437 0.97724 0.91555 0.92346 1.20689 1.29238 0.92091 1.12279 0.90016 1.25043 0.95690 0.94711 0.96711 1.69887 1.36375 1.11952 1.34115 0.87158 0.79578 0.82055 0.82448 1.19879 1.18469 1.21219 1.21784 0.96397 0.93110 0.98600 1.22142 0.95673 0.97915 0.97458 1.22576 0.98666 0.95624 0.99920 1.22362 0.98888 0.96652 0.98252 1.22591 0.99885 0.98453 0.96214 0.90754 0.92389 0.88110 0.92358 0.91790 0.91659 0.91836 0.92280 0.92582 0.92866 0.92359 0.92966 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 8.82 37.16 0.33 -3.30 16 2 C 0.28 6.00 1.76 -26.73 -0.05 5.95 16 3 F -0.22 -4.56 13.79 2.25 0.03 -4.53 16 4 F -0.21 -4.71 16.23 2.25 0.04 -4.68 16 5 C -0.01 -0.23 0.83 -91.77 -0.08 -0.30 16 6 H 0.06 1.33 4.76 -51.93 -0.25 1.08 16 7 C -0.51 -13.14 6.51 -34.44 -0.22 -13.36 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.89 -25.40 13.96 55.43 0.77 -24.62 16 11 Si 0.86 19.89 26.71 -169.99 -4.54 15.35 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.26 -5.61 5.30 56.52 0.30 -5.32 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.08 -1.66 2.44 -89.50 -0.22 -1.87 16 16 C -0.09 -1.88 5.58 -25.07 -0.14 -2.02 16 17 C -0.13 -2.12 6.91 -24.74 -0.17 -2.29 16 18 C -0.12 -1.97 6.83 -25.08 -0.17 -2.14 16 19 C -0.13 -2.42 5.35 -25.62 -0.14 -2.56 16 20 H 0.07 1.39 6.78 -51.93 -0.35 1.04 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.10 2.11 7.32 -51.93 -0.38 1.73 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.06 1.38 7.79 -51.93 -0.40 0.98 16 25 H 0.06 1.41 7.77 -51.93 -0.40 1.00 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.39 5.73 -51.93 -0.30 1.09 16 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -27.05 254.19 -5.53 -32.58 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.70 Total: 1.89 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -0.95 Total: -19.81 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.77 Total: -24.62 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.54 Total: 15.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.05 -5.53 -32.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257967909.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.239 kcal (2) G-P(sol) polarization free energy of solvation -27.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds