Wall clock time and date at job start Mon Mar 30 2020 20:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.46856 * 2 1 4 4 C 1.37641 * 120.12891 * 265.02124 * 3 2 1 5 5 C 1.38603 * 120.24792 * 179.97438 * 4 3 2 6 6 C 1.38657 * 120.50444 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.88088 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46993 * 299.99885 * 7 6 5 9 9 C 1.53002 * 109.46906 * 59.99343 * 7 6 5 10 10 C 1.37599 * 120.24443 * 359.73148 * 6 5 4 11 11 C 1.40702 * 120.12571 * 85.00542 * 3 2 1 12 12 C 1.41397 * 120.24225 * 359.97438 * 11 3 2 13 13 H 1.07992 * 120.00244 * 334.71680 * 12 11 3 14 14 C 1.39946 * 119.99766 * 154.71557 * 12 11 3 15 15 N 1.30832 * 120.00122 * 342.96408 * 14 12 11 16 16 Si 1.86797 * 120.00107 * 162.96162 * 14 12 11 17 17 H 1.48492 * 109.47393 * 90.00194 * 16 14 12 18 18 H 1.48499 * 109.47138 * 210.00415 * 16 14 12 19 19 H 1.48506 * 109.47011 * 330.00098 * 16 14 12 20 20 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47167 * 299.99682 * 1 2 3 22 22 H 1.08996 * 109.47487 * 59.99392 * 1 2 3 23 23 H 1.09002 * 109.46740 * 240.00619 * 2 1 3 24 24 H 1.08995 * 109.47676 * 120.00088 * 2 1 3 25 25 H 1.08000 * 119.87288 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.75193 * 180.02562 * 5 4 3 27 27 H 1.08993 * 109.47371 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47222 * 59.99218 * 8 7 6 29 29 H 1.08997 * 109.47275 * 179.97438 * 8 7 6 30 30 H 1.09008 * 109.46934 * 299.99631 * 8 7 6 31 31 H 1.08997 * 109.46890 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.47476 * 300.00750 * 9 7 6 33 33 H 1.09006 * 109.47154 * 60.00329 * 9 7 6 34 34 H 1.08002 * 120.12976 * 180.28297 * 10 6 5 35 35 H 0.96994 * 119.99932 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3599 2.0379 -1.1860 5 6 2.8216 3.3447 -1.1889 6 6 2.9594 4.0452 -0.0002 7 6 3.4632 5.4654 -0.0196 8 6 4.8630 5.5015 -0.6362 9 6 2.5163 6.3310 -0.8533 10 6 2.6330 3.4501 1.1968 11 6 2.1677 2.1220 1.2123 12 6 1.8333 1.4987 2.4367 13 1 1.1197 0.6884 2.4529 14 6 2.4272 1.9320 3.6275 15 7 3.5126 2.6616 3.5896 16 14 1.6703 1.4687 5.2712 17 1 2.2512 0.1849 5.7395 18 1 1.9567 2.5337 6.2658 19 1 0.2010 1.3195 5.1151 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.2561 1.5019 -2.1178 26 1 3.0760 3.8212 -2.1241 27 1 3.5046 5.8502 0.9992 28 1 4.8212 5.1167 -1.6552 29 1 5.2272 6.5287 -0.6508 30 1 5.5376 4.8847 -0.0423 31 1 2.8809 7.3581 -0.8677 32 1 2.4744 5.9462 -1.8723 33 1 1.5190 6.3053 -0.4140 34 1 2.7367 3.9989 2.1211 35 1 3.9240 2.9621 4.4149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258167945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:47 Heat of formation + Delta-G solvation = -18.327014 kcal Electronic energy + Delta-G solvation = -14722.355833 eV Core-core repulsion = 12490.496827 eV Total energy + Delta-G solvation = -2231.859006 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.16566 -35.24647 -33.48545 -31.88193 -29.45137 -27.70025 -26.55991 -25.23368 -22.78814 -21.19069 -20.37698 -18.65769 -16.65617 -15.45248 -14.64165 -14.30605 -13.80501 -13.43654 -12.88909 -12.78450 -12.55152 -12.30989 -12.06072 -11.73605 -11.55526 -11.34396 -11.07060 -10.83633 -10.65769 -10.56522 -10.45623 -10.22200 -10.01490 -9.97607 -9.31175 -9.12197 -9.01623 -7.27516 -7.07604 -6.67518 -4.27740 2.82726 3.05559 3.09411 3.13655 3.28835 3.97176 4.66754 5.56700 5.60231 5.60607 5.93952 6.00342 6.02544 6.12020 6.25710 6.33444 6.35068 6.39371 6.48782 6.56876 6.62002 6.65190 6.82017 6.85214 6.87403 7.03520 7.06744 7.20891 7.41231 7.53033 7.71935 8.01167 8.14100 8.21664 8.39588 8.70701 8.98035 9.07083 10.25624 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.011419 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.305419 B = 2451.536317 C = 3402.896877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.194 4.194 4 C -0.093 4.093 5 C -0.229 4.229 6 C -0.070 4.070 7 C -0.051 4.051 8 C -0.136 4.136 9 C -0.137 4.137 10 C -0.157 4.157 11 C 0.115 3.885 12 C -0.461 4.461 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.796 5.796 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.037 0.963 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 1.912 -3.151 3.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C -0.195 4.195 4 C -0.112 4.112 5 C -0.249 4.249 6 C -0.070 4.070 7 C -0.070 4.070 8 C -0.193 4.193 9 C -0.194 4.194 10 C -0.176 4.176 11 C 0.113 3.887 12 C -0.490 4.490 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.421 5.421 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.185 1.185 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.040 2.021 -2.989 3.755 hybrid contribution -0.183 -0.182 0.794 0.835 sum -1.223 1.839 -2.194 3.113 Atomic orbital electron populations 1.21728 0.97042 0.99450 1.01612 1.20102 0.94351 0.94809 1.00286 1.19679 1.10939 0.95453 0.93439 1.20360 1.00328 0.94753 0.95734 1.20117 1.13131 0.95910 0.95720 1.19365 1.00021 0.93702 0.93889 1.19993 0.94220 0.93796 0.98967 1.21774 0.96756 0.99985 1.00782 1.21799 0.99438 0.98039 1.00110 1.21205 1.05418 0.95215 0.95756 1.17417 0.88834 0.90823 0.91604 1.19558 1.22380 1.16342 0.90766 0.90251 1.25885 0.93499 0.93496 1.01179 1.69837 1.14363 1.28061 1.29881 0.86428 0.80836 0.78903 0.81248 1.19612 1.20219 1.18531 0.94419 0.92374 0.93834 0.94057 0.91759 0.89794 0.89801 0.91644 0.93012 0.93894 0.92751 0.93838 0.92931 0.93014 0.86646 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.79 37.16 0.36 -2.27 16 2 C -0.06 -1.22 5.40 -27.88 -0.15 -1.37 16 3 C -0.19 -4.68 5.19 -103.91 -0.54 -5.22 16 4 C -0.09 -2.14 9.66 -39.66 -0.38 -2.52 16 5 C -0.23 -5.16 8.72 -39.29 -0.34 -5.51 16 6 C -0.07 -1.60 4.77 -104.70 -0.50 -2.10 16 7 C -0.05 -0.99 3.09 -91.77 -0.28 -1.27 16 8 C -0.14 -2.33 9.01 37.16 0.33 -2.00 16 9 C -0.14 -2.26 9.01 37.16 0.33 -1.93 16 10 C -0.16 -4.06 8.30 -38.87 -0.32 -4.39 16 11 C 0.12 3.05 5.56 -106.82 -0.59 2.46 16 12 C -0.46 -12.05 8.12 -37.74 -0.31 -12.35 16 13 H 0.08 2.00 6.08 -52.49 -0.32 1.68 16 14 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 15 N -0.80 -20.66 10.98 55.55 0.61 -20.05 16 16 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 1.16 7.31 -51.93 -0.38 0.78 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 24 H 0.06 1.40 7.05 -51.93 -0.37 1.03 16 25 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.08 1.71 7.07 -52.49 -0.37 1.34 16 27 H 0.07 1.29 7.86 -51.93 -0.41 0.88 16 28 H 0.05 0.86 7.37 -51.93 -0.38 0.48 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.85 7.37 -51.93 -0.38 0.47 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.12 3.11 6.09 -52.49 -0.32 2.80 16 35 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 LS Contribution 283.13 15.07 4.27 4.27 Total: -1.00 -26.71 283.13 -8.07 -34.79 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.44 Total: 3.86 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: -2.48 Total: -36.64 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.71 -8.07 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258167945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.459 kcal (2) G-P(sol) polarization free energy of solvation -26.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds