Wall clock time and date at job start Mon Mar 30 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 C 1.52999 * 109.47588 * 119.99918 * 2 1 3 5 5 H 1.09001 * 109.46742 * 300.00466 * 4 2 1 6 6 C 1.52995 * 109.47374 * 180.02562 * 4 2 1 7 7 C 1.50699 * 109.46981 * 60.00172 * 4 2 1 8 8 C 1.37633 * 120.12846 * 54.57317 * 7 4 2 9 9 C 1.38617 * 120.25050 * 179.97438 * 8 7 4 10 10 C 1.38653 * 120.50121 * 0.03286 * 9 8 7 11 11 C 1.37594 * 120.24931 * 0.02562 * 10 9 8 12 12 C 1.40700 * 120.13052 * 234.30604 * 7 4 2 13 13 C 1.41406 * 120.24040 * 359.97438 * 12 7 4 14 14 H 1.07995 * 119.99698 * 328.53482 * 13 12 7 15 15 C 1.39943 * 119.99444 * 148.53306 * 13 12 7 16 16 N 1.30822 * 120.00289 * 348.35523 * 15 13 12 17 17 Si 1.86805 * 119.99695 * 168.35954 * 15 13 12 18 18 H 1.48508 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47178 * 119.99616 * 17 15 13 20 20 H 1.48493 * 109.47049 * 240.00036 * 17 15 13 21 21 H 1.08999 * 109.47098 * 299.99681 * 1 2 3 22 22 H 1.08992 * 109.47319 * 59.99927 * 1 2 3 23 23 H 1.09001 * 109.46590 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47098 * 240.00319 * 2 1 3 25 25 H 1.09001 * 109.47111 * 59.99730 * 3 2 1 26 26 H 1.08994 * 109.47289 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47225 * 300.00494 * 3 2 1 28 28 H 1.08999 * 109.47088 * 300.00265 * 6 4 2 29 29 H 1.09001 * 109.46813 * 59.99905 * 6 4 2 30 30 H 1.08992 * 109.47106 * 180.02562 * 6 4 2 31 31 H 1.08004 * 119.87596 * 0.02562 * 8 7 4 32 32 H 1.08000 * 119.74999 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.87998 * 179.97438 * 10 9 8 34 34 H 1.08001 * 120.13578 * 179.97438 * 11 10 9 35 35 H 0.97006 * 119.99937 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7206 1.2495 7 6 1.5379 -2.1420 1.2492 8 6 1.7743 -2.9583 0.1666 9 6 1.3139 -4.2658 0.1642 10 6 0.6107 -4.7663 1.2492 11 6 0.3616 -3.9680 2.3418 12 6 0.8303 -2.6410 2.3583 13 6 0.5868 -1.8135 3.4787 14 1 1.2976 -1.0463 3.7480 15 6 -0.5753 -1.9887 4.2385 16 7 -1.5398 -2.7515 3.7922 17 14 -0.7492 -1.1331 5.8900 18 1 0.4722 -0.3343 6.1647 19 1 -1.9318 -0.2356 5.8604 20 1 -0.9258 -2.1497 6.9579 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 3.9338 -1.2341 0.3595 29 1 3.9330 0.3072 1.2497 30 1 3.9334 -1.2348 2.1392 31 1 2.3213 -2.5790 -0.6839 32 1 1.5044 -4.8994 -0.6895 33 1 0.2563 -5.7864 1.2365 34 1 -0.1867 -4.3596 3.1858 35 1 -2.3455 -2.8726 4.3188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:48 Heat of formation + Delta-G solvation = -24.195565 kcal Electronic energy + Delta-G solvation = -15029.105125 eV Core-core repulsion = 12796.991640 eV Total energy + Delta-G solvation = -2232.113486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07908 -37.26519 -35.39763 -32.43413 -31.34231 -29.99352 -27.76753 -26.91009 -24.49981 -22.97808 -21.82531 -19.91492 -19.01408 -17.32783 -16.44388 -15.71725 -15.59827 -15.05870 -14.87193 -14.38228 -14.26507 -13.90577 -13.35636 -13.07267 -12.97826 -12.84234 -12.79394 -12.64598 -12.37985 -12.23713 -11.98333 -11.74202 -11.56767 -11.36975 -11.03985 -10.80714 -10.77593 -9.14917 -9.05650 -8.51304 -6.24962 1.03669 1.18973 1.38076 1.51376 1.51671 2.23739 2.84476 3.74964 4.05137 4.16735 4.29355 4.51401 4.58091 4.67141 4.75567 4.82749 4.84143 4.90397 5.00379 5.11915 5.16698 5.18489 5.27665 5.31151 5.37296 5.43437 5.49015 5.58918 5.68559 5.73666 5.86778 6.12408 6.23643 6.24573 6.50849 6.79760 7.05964 7.14846 8.46430 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.012588 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.708375 B = 2223.735191 C = 2961.922468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.033 4.033 5 H 0.058 0.942 6 C -0.133 4.133 7 C -0.165 4.165 8 C -0.100 4.100 9 C -0.233 4.233 10 C -0.126 4.126 11 C -0.184 4.184 12 C 0.082 3.918 13 C -0.488 4.488 14 H 0.076 0.924 15 C 0.033 3.967 16 N -0.841 5.841 17 Si 0.971 3.029 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.270 1.270 21 H 0.036 0.964 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 5.485 -4.005 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.198 4.198 4 C -0.052 4.052 5 H 0.076 0.924 6 C -0.190 4.190 7 C -0.167 4.167 8 C -0.118 4.118 9 C -0.252 4.252 10 C -0.144 4.144 11 C -0.203 4.203 12 C 0.080 3.920 13 C -0.519 4.519 14 H 0.094 0.906 15 C -0.179 4.179 16 N -0.469 5.469 17 Si 0.793 3.207 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.056 0.944 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.613 5.413 -3.945 8.133 hybrid contribution -0.682 -0.245 0.945 1.191 sum 3.931 5.168 -3.000 7.153 Atomic orbital electron populations 1.21671 0.96558 1.00268 1.00515 1.21078 0.94804 0.96604 0.97245 1.21858 1.01543 0.94718 1.01691 1.19941 0.95181 0.92006 0.98035 0.92376 1.21814 0.94587 1.01648 1.00952 1.20016 1.06386 0.96059 0.94191 1.20668 0.99952 0.93726 0.97476 1.20774 1.07656 0.97112 0.99620 1.20918 0.99956 0.98579 0.94970 1.21247 1.05596 0.94796 0.98695 1.17842 0.90203 0.91549 0.92413 1.19669 1.05297 1.16497 1.10423 0.90627 1.26606 0.94582 0.94993 1.01735 1.69889 1.05621 1.33540 1.37859 0.85321 0.79153 0.78670 0.77580 1.18026 1.19511 1.19470 0.94448 0.91906 0.95392 0.91450 0.93396 0.91323 0.91764 0.92558 0.90972 0.94595 0.86760 0.86865 0.87982 0.89149 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.95 71.98 0.64 -4.24 16 2 C -0.08 -2.61 2.27 -10.79 -0.02 -2.63 16 3 C -0.14 -3.67 8.84 71.98 0.64 -3.04 16 4 C -0.03 -1.29 1.98 -11.54 -0.02 -1.31 16 5 H 0.06 2.53 5.88 -2.39 -0.01 2.51 16 6 C -0.13 -4.34 8.71 71.98 0.63 -3.71 16 7 C -0.17 -7.64 3.58 -19.41 -0.07 -7.71 16 8 C -0.10 -4.31 8.75 22.22 0.19 -4.11 16 9 C -0.23 -10.21 10.05 22.46 0.23 -9.98 16 10 C -0.13 -6.06 10.02 22.22 0.22 -5.83 16 11 C -0.18 -9.97 8.64 22.73 0.20 -9.77 16 12 C 0.08 4.39 5.51 -21.29 -0.12 4.27 16 13 C -0.49 -26.18 8.09 23.46 0.19 -25.99 16 14 H 0.08 3.93 6.59 -2.91 -0.02 3.92 16 15 C 0.03 1.71 5.22 85.26 0.45 2.15 16 16 N -0.84 -45.64 11.06 21.83 0.24 -45.40 16 17 Si 0.97 39.58 29.58 68.60 2.03 41.61 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.03 1.20 7.22 -2.39 -0.02 1.18 16 24 H 0.07 2.13 7.11 -2.39 -0.02 2.11 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.57 6.43 -2.39 -0.02 1.56 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.70 7.73 -2.39 -0.02 1.68 16 29 H 0.07 1.94 6.43 -2.39 -0.02 1.93 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 4.21 7.10 -2.91 -0.02 4.19 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.09 5.20 6.45 -2.91 -0.02 5.18 16 35 H 0.28 13.97 8.30 -92.70 -0.77 13.20 16 Total: -1.00 -58.23 278.61 6.47 -51.76 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.05 Total: 23.94 kcal Atomic # 6 Polarization: -75.05 SS G_CDS: 3.15 Total: -71.91 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.24 Total: -45.40 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -58.23 6.47 -51.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.566 kcal (2) G-P(sol) polarization free energy of solvation -58.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds