Wall clock time and date at job start Mon Mar 30 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46707 * 2 1 4 4 C 1.52995 * 109.47309 * 240.00523 * 2 1 3 5 5 H 1.09003 * 109.47519 * 59.99472 * 4 2 1 6 6 C 1.52999 * 109.46954 * 299.99718 * 4 2 1 7 7 C 1.50695 * 109.47427 * 179.97438 * 4 2 1 8 8 C 1.38657 * 119.87596 * 59.72293 * 7 4 2 9 9 C 1.38620 * 120.49947 * 179.72160 * 8 7 4 10 10 C 1.37642 * 120.24749 * 0.55619 * 9 8 7 11 11 C 1.40691 * 119.74229 * 359.72470 * 10 9 8 12 12 C 1.41405 * 120.24048 * 180.02562 * 11 10 9 13 13 H 1.07992 * 119.99980 * 204.36755 * 12 11 10 14 14 C 1.39945 * 119.99650 * 24.36607 * 12 11 10 15 15 N 1.30827 * 120.00393 * 17.86829 * 14 12 11 16 16 Si 1.86800 * 119.99603 * 197.85897 * 14 12 11 17 17 H 1.48505 * 109.46937 * 90.00488 * 16 14 12 18 18 H 1.48502 * 109.46946 * 210.00075 * 16 14 12 19 19 H 1.48496 * 109.47580 * 330.00369 * 16 14 12 20 20 C 1.37603 * 119.87688 * 239.99957 * 7 4 2 21 21 H 1.09002 * 109.47199 * 299.99617 * 1 2 3 22 22 H 1.08991 * 109.47338 * 59.99727 * 1 2 3 23 23 H 1.08999 * 109.46388 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47293 * 119.99728 * 2 1 3 25 25 H 1.09002 * 109.46979 * 60.00248 * 3 2 1 26 26 H 1.09004 * 109.47030 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47550 * 300.00234 * 3 2 1 28 28 H 1.09004 * 109.47205 * 59.99939 * 6 4 2 29 29 H 1.09002 * 109.47124 * 179.97438 * 6 4 2 30 30 H 1.09001 * 109.47229 * 299.99876 * 6 4 2 31 31 H 1.07999 * 119.74989 * 0.02562 * 8 7 4 32 32 H 1.08003 * 119.87320 * 180.25753 * 9 8 7 33 33 H 1.08000 * 120.12312 * 179.70069 * 10 9 8 34 34 H 0.96991 * 119.99623 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12339 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 1 1.6767 -0.2073 -2.1393 6 6 1.5301 -2.1636 -1.2493 7 6 3.5470 -0.7206 -1.2496 8 6 4.2381 -1.3164 -0.2056 9 6 5.6243 -1.3284 -0.1957 10 6 6.3301 -0.7375 -1.2190 11 6 5.6393 -0.1249 -2.2806 12 6 6.3539 0.4848 -3.3375 13 1 5.8916 1.2671 -3.9211 14 6 7.6600 0.0744 -3.6273 15 7 8.0986 -1.0749 -3.1819 16 14 8.7772 1.1676 -4.6502 17 1 9.5288 2.0833 -3.7546 18 1 9.7336 0.3240 -5.4110 19 1 7.9575 1.9645 -5.5979 20 6 4.2320 -0.1238 -2.2831 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9565 -0.8899 28 1 0.4401 -2.1637 -1.2493 29 1 1.8931 -2.6773 -2.1396 30 1 1.8935 -2.6775 -0.3594 31 1 3.6924 -1.7789 0.6035 32 1 6.1523 -1.7990 0.6205 33 1 7.4100 -0.7438 -1.2068 34 1 9.0040 -1.3591 -3.3824 35 1 3.6917 0.3439 -3.0928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:24 Heat of formation + Delta-G solvation = -15.504604 kcal Electronic energy + Delta-G solvation = -14581.472044 eV Core-core repulsion = 12349.735426 eV Total energy + Delta-G solvation = -2231.736617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.37879 -36.00648 -33.44765 -30.81837 -29.75363 -28.42117 -26.42783 -25.14763 -23.16202 -20.95573 -20.36982 -18.84227 -16.80975 -15.35836 -14.86755 -14.27211 -14.27071 -13.63745 -13.38964 -12.98918 -12.60590 -12.19094 -11.93423 -11.73815 -11.56070 -11.45845 -11.08022 -11.04838 -10.81837 -10.61259 -10.48215 -10.41615 -10.11635 -9.95978 -9.32122 -9.26482 -9.08237 -7.39165 -7.14567 -6.70125 -4.29830 2.83831 3.07418 3.09967 3.13234 3.27765 3.97135 4.66792 5.20320 5.33216 5.35656 5.65270 5.82568 5.87998 6.00117 6.01683 6.08552 6.19070 6.24113 6.35740 6.38914 6.49287 6.54998 6.60380 6.70714 6.83027 6.87158 7.01373 7.12808 7.33705 7.48240 7.67896 8.00239 8.11925 8.19740 8.37029 8.71110 8.96359 9.05364 10.24886 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.007179 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.288623 B = 3899.421477 C = 4103.952171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.042 4.042 5 H 0.063 0.937 6 C -0.140 4.140 7 C -0.051 4.051 8 C -0.232 4.232 9 C -0.107 4.107 10 C -0.168 4.168 11 C 0.110 3.890 12 C -0.467 4.467 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.797 5.797 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.218 4.218 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.279 0.721 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 1.219 3.414 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.060 4.060 5 H 0.082 0.918 6 C -0.197 4.197 7 C -0.052 4.052 8 C -0.251 4.251 9 C -0.125 4.125 10 C -0.187 4.187 11 C 0.108 3.892 12 C -0.496 4.496 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.238 4.238 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.422 1.060 3.389 8.227 hybrid contribution 0.678 0.347 -0.507 0.915 sum -6.744 1.407 2.882 7.467 Atomic orbital electron populations 1.21924 0.96297 1.01272 1.01017 1.21104 0.94229 0.96503 0.98443 1.21798 1.02434 0.95563 1.00261 1.20101 0.93412 0.95345 0.97178 0.91811 1.21851 0.99339 0.96603 1.01912 1.19154 0.92458 0.98396 0.95145 1.20125 0.93631 1.10870 1.00498 1.20664 0.93920 1.00107 0.97852 1.21301 0.99595 1.03752 0.94073 1.17582 0.90839 0.89364 0.91457 1.19560 0.97578 1.18410 1.14091 0.90627 1.25880 0.98484 0.94289 0.95403 1.69838 1.17582 1.17072 1.37742 0.86357 0.79849 0.80690 0.80054 1.19346 1.20399 1.18687 1.20846 0.94154 1.09147 0.99607 0.93388 0.93067 0.92733 0.91417 0.93874 0.91546 0.93304 0.93390 0.92920 0.92825 0.89828 0.89749 0.86693 0.91035 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.84 37.16 0.33 -1.54 16 2 C -0.08 -1.30 2.32 -90.62 -0.21 -1.51 16 3 C -0.14 -2.27 8.95 37.16 0.33 -1.93 16 4 C -0.04 -0.74 2.15 -91.78 -0.20 -0.94 16 5 H 0.06 1.13 7.86 -51.93 -0.41 0.72 16 6 C -0.14 -2.22 8.66 37.16 0.32 -1.90 16 7 C -0.05 -1.12 3.51 -104.70 -0.37 -1.49 16 8 C -0.23 -5.17 8.72 -39.29 -0.34 -5.51 16 9 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 10 C -0.17 -4.46 8.70 -38.87 -0.34 -4.79 16 11 C 0.11 2.97 5.58 -106.83 -0.60 2.38 16 12 C -0.47 -12.63 9.05 -37.74 -0.34 -12.97 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.80 -21.06 10.95 55.55 0.61 -20.45 16 16 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.22 -5.37 9.41 -38.87 -0.37 -5.74 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 24 H 0.07 1.08 7.36 -51.93 -0.38 0.70 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.23 7.22 -51.93 -0.37 0.85 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.85 7.39 -51.93 -0.38 0.46 16 31 H 0.08 1.69 7.07 -52.49 -0.37 1.32 16 32 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.09 2.10 7.93 -52.49 -0.42 1.68 16 LS Contribution 281.74 15.07 4.25 4.25 Total: -1.00 -27.15 281.74 -7.85 -35.00 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.41 Total: 4.25 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: -2.26 Total: -37.04 kcal Atomic # 7 Polarization: -21.06 SS G_CDS: 0.61 Total: -20.45 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.15 -7.85 -35.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.500 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds