Wall clock time and date at job start Mon Mar 30 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46707 * 2 1 4 4 C 1.52995 * 109.47309 * 240.00523 * 2 1 3 5 5 H 1.09003 * 109.47519 * 59.99472 * 4 2 1 6 6 C 1.52999 * 109.46954 * 299.99718 * 4 2 1 7 7 C 1.50695 * 109.47427 * 179.97438 * 4 2 1 8 8 C 1.38657 * 119.87596 * 59.72293 * 7 4 2 9 9 C 1.38620 * 120.49947 * 179.72160 * 8 7 4 10 10 C 1.37642 * 120.24749 * 0.55619 * 9 8 7 11 11 C 1.40691 * 119.74229 * 359.72470 * 10 9 8 12 12 C 1.41405 * 120.24048 * 180.02562 * 11 10 9 13 13 H 1.07992 * 119.99980 * 204.36755 * 12 11 10 14 14 C 1.39945 * 119.99650 * 24.36607 * 12 11 10 15 15 N 1.30827 * 120.00393 * 17.86829 * 14 12 11 16 16 Si 1.86800 * 119.99603 * 197.85897 * 14 12 11 17 17 H 1.48505 * 109.46937 * 90.00488 * 16 14 12 18 18 H 1.48502 * 109.46946 * 210.00075 * 16 14 12 19 19 H 1.48496 * 109.47580 * 330.00369 * 16 14 12 20 20 C 1.37603 * 119.87688 * 239.99957 * 7 4 2 21 21 H 1.09002 * 109.47199 * 299.99617 * 1 2 3 22 22 H 1.08991 * 109.47338 * 59.99727 * 1 2 3 23 23 H 1.08999 * 109.46388 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47293 * 119.99728 * 2 1 3 25 25 H 1.09002 * 109.46979 * 60.00248 * 3 2 1 26 26 H 1.09004 * 109.47030 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47550 * 300.00234 * 3 2 1 28 28 H 1.09004 * 109.47205 * 59.99939 * 6 4 2 29 29 H 1.09002 * 109.47124 * 179.97438 * 6 4 2 30 30 H 1.09001 * 109.47229 * 299.99876 * 6 4 2 31 31 H 1.07999 * 119.74989 * 0.02562 * 8 7 4 32 32 H 1.08003 * 119.87320 * 180.25753 * 9 8 7 33 33 H 1.08000 * 120.12312 * 179.70069 * 10 9 8 34 34 H 0.96991 * 119.99623 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12339 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 1 1.6767 -0.2073 -2.1393 6 6 1.5301 -2.1636 -1.2493 7 6 3.5470 -0.7206 -1.2496 8 6 4.2381 -1.3164 -0.2056 9 6 5.6243 -1.3284 -0.1957 10 6 6.3301 -0.7375 -1.2190 11 6 5.6393 -0.1249 -2.2806 12 6 6.3539 0.4848 -3.3375 13 1 5.8916 1.2671 -3.9211 14 6 7.6600 0.0744 -3.6273 15 7 8.0986 -1.0749 -3.1819 16 14 8.7772 1.1676 -4.6502 17 1 9.5288 2.0833 -3.7546 18 1 9.7336 0.3240 -5.4110 19 1 7.9575 1.9645 -5.5979 20 6 4.2320 -0.1238 -2.2831 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9565 -0.8899 28 1 0.4401 -2.1637 -1.2493 29 1 1.8931 -2.6773 -2.1396 30 1 1.8935 -2.6775 -0.3594 31 1 3.6924 -1.7789 0.6035 32 1 6.1523 -1.7990 0.6205 33 1 7.4100 -0.7438 -1.2068 34 1 9.0040 -1.3591 -3.3824 35 1 3.6917 0.3439 -3.0928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:24 Heat of formation + Delta-G solvation = -27.832777 kcal Electronic energy + Delta-G solvation = -14582.006633 eV Core-core repulsion = 12349.735426 eV Total energy + Delta-G solvation = -2232.271207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05433 -37.60002 -35.31129 -32.29361 -31.69720 -29.98121 -27.66351 -27.08584 -24.59988 -22.73334 -22.12207 -20.36918 -18.66294 -17.24700 -16.55057 -15.95464 -15.61030 -15.07474 -15.03446 -14.54873 -14.18804 -13.87743 -13.40131 -13.11340 -12.99856 -12.93707 -12.76037 -12.62844 -12.47571 -12.16328 -12.07521 -11.87664 -11.50401 -11.42685 -11.07896 -10.99708 -10.94334 -9.34906 -9.02990 -8.62455 -6.33457 1.01314 1.16134 1.36197 1.49588 1.53364 2.20389 2.74619 3.74270 3.93952 4.01152 4.21478 4.46345 4.49635 4.68090 4.71821 4.75479 4.83949 4.89333 5.03401 5.05094 5.08948 5.13508 5.18015 5.19873 5.28059 5.39566 5.42912 5.51516 5.61415 5.66986 5.77568 6.08697 6.15248 6.26710 6.44979 6.74153 6.96994 7.08641 8.34912 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.007179 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.288623 B = 3899.421477 C = 4103.952171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.043 4.043 5 H 0.061 0.939 6 C -0.136 4.136 7 C -0.041 4.041 8 C -0.228 4.228 9 C -0.111 4.111 10 C -0.198 4.198 11 C 0.079 3.921 12 C -0.506 4.506 13 H 0.071 0.929 14 C 0.035 3.965 15 N -0.829 5.829 16 Si 0.981 3.019 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.238 4.238 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.287 0.713 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 1.233 4.049 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.200 4.200 4 C -0.061 4.061 5 H 0.080 0.920 6 C -0.193 4.193 7 C -0.041 4.041 8 C -0.247 4.247 9 C -0.130 4.130 10 C -0.218 4.218 11 C 0.077 3.923 12 C -0.536 4.536 13 H 0.089 0.911 14 C -0.179 4.179 15 N -0.455 5.455 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.258 4.258 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.032 1.065 4.035 9.949 hybrid contribution 1.077 0.303 -0.627 1.283 sum -7.954 1.368 3.408 8.761 Atomic orbital electron populations 1.21868 0.93462 1.02476 1.02093 1.21074 0.96521 0.95476 0.96816 1.21785 1.00129 0.96562 1.01494 1.20186 0.90186 0.97214 0.98560 0.92011 1.21825 1.01391 0.94724 1.01362 1.19597 0.95156 0.95842 0.93513 1.20469 0.93130 1.09998 1.01117 1.20969 0.94990 0.99381 0.97636 1.21241 0.98934 1.06110 0.95512 1.17951 0.92184 0.90158 0.91976 1.19808 0.99266 1.19394 1.15103 0.91074 1.26749 0.99359 0.95368 0.96471 1.69895 1.18329 1.18457 1.38867 0.85223 0.77608 0.78618 0.78344 1.18700 1.19125 1.18265 1.21018 0.93621 1.10262 1.00873 0.91740 0.92665 0.91466 0.91547 0.91620 0.95020 0.93174 0.90172 0.94285 0.92578 0.86913 0.87616 0.88580 0.90283 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.84 71.98 0.64 -2.36 16 2 C -0.08 -2.26 2.32 -10.79 -0.03 -2.28 16 3 C -0.14 -4.27 8.95 71.98 0.64 -3.63 16 4 C -0.04 -1.43 2.15 -11.54 -0.02 -1.46 16 5 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 6 C -0.14 -3.92 8.66 71.98 0.62 -3.30 16 7 C -0.04 -1.78 3.51 -19.92 -0.07 -1.85 16 8 C -0.23 -9.94 8.72 22.46 0.20 -9.74 16 9 C -0.11 -5.37 10.02 22.22 0.22 -5.14 16 10 C -0.20 -10.95 8.70 22.73 0.20 -10.75 16 11 C 0.08 4.48 5.58 -21.29 -0.12 4.36 16 12 C -0.51 -28.61 9.05 23.46 0.21 -28.39 16 13 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 14 C 0.03 1.82 5.14 85.26 0.44 2.26 16 15 N -0.83 -45.24 10.95 21.83 0.24 -45.00 16 16 Si 0.98 39.71 29.59 68.60 2.03 41.74 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 20 C -0.24 -12.09 9.41 22.73 0.21 -11.88 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 24 H 0.07 1.90 7.36 -2.39 -0.02 1.88 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.15 7.22 -2.38 -0.02 1.13 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.81 6.43 -2.38 -0.02 1.80 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.59 7.39 -2.39 -0.02 1.57 16 31 H 0.11 4.24 7.07 -2.91 -0.02 4.22 16 32 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 34 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 35 H 0.09 4.30 7.93 -2.91 -0.02 4.28 16 Total: -1.00 -60.43 281.74 6.46 -53.97 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.04 Total: 23.45 kcal Atomic # 6 Polarization: -77.30 SS G_CDS: 3.15 Total: -74.15 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.24 Total: -45.00 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -60.43 6.46 -53.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.135 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds