Wall clock time and date at job start Mon Mar 30 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48500 * 109.46718 * 239.99926 * 3 2 1 5 5 H 1.48497 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47282 * 120.00088 * 3 2 1 7 7 C 1.37886 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99491 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47152 * 179.97438 * 9 7 2 11 11 N 1.29748 * 126.28196 * 90.02449 * 10 9 7 12 12 O 1.41362 * 109.71341 * 180.02562 * 11 10 9 13 13 C 1.34885 * 109.30944 * 0.02562 * 12 11 10 14 14 C 1.40339 * 107.12697 * 359.97438 * 13 12 11 15 15 C 1.39766 * 119.88815 * 180.02562 * 14 13 12 16 16 C 1.36640 * 119.89478 * 359.71006 * 15 14 13 17 17 C 1.38719 * 120.56055 * 0.54836 * 16 15 14 18 18 C 1.38269 * 120.53712 * 359.46444 * 17 16 15 19 19 O 1.35964 * 120.15309 * 180.27822 * 18 17 16 20 20 H 0.96997 * 120.00075 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47232 * 60.00017 * 9 7 2 22 22 H 1.09004 * 109.47099 * 299.99965 * 9 7 2 23 23 H 1.07999 * 120.05520 * 179.97438 * 15 14 13 24 24 H 1.07995 * 119.71895 * 180.26721 * 16 15 14 25 25 H 1.08002 * 119.73341 * 179.74587 * 17 16 15 26 26 H 0.96705 * 113.99973 * 89.99594 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2305 -3.6446 0.0015 11 7 2.7299 -4.2280 1.0472 12 8 3.6106 -5.2575 0.6439 13 6 3.6527 -5.3061 -0.7034 14 6 2.7943 -4.3034 -1.1801 15 6 2.6358 -4.1187 -2.5564 16 6 3.3216 -4.9110 -3.4334 17 6 4.1679 -5.9077 -2.9700 18 6 4.3397 -6.1086 -1.6128 19 8 5.1754 -7.0842 -1.1673 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 1.9757 -3.3481 -2.9263 24 1 3.2003 -4.7629 -4.4962 25 1 4.7003 -6.5289 -3.6750 26 1 6.0881 -6.7916 -1.0383 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277450.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:33 Heat of formation + Delta-G solvation = -12.576781 kcal Electronic energy + Delta-G solvation = -13946.273902 eV Core-core repulsion = 11377.572145 eV Total energy + Delta-G solvation = -2568.701757 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.76959 -39.59185 -37.52192 -36.09840 -34.34674 -31.12883 -30.56969 -30.30969 -25.79948 -24.14138 -23.76520 -21.40097 -19.43514 -18.69906 -18.34104 -17.54812 -16.93696 -16.66473 -16.52316 -15.57723 -15.04290 -14.52979 -14.36833 -13.93023 -13.51310 -13.08705 -12.93756 -12.74152 -12.54504 -12.26805 -12.19476 -12.03958 -11.87455 -11.29008 -10.67930 -9.96036 -9.42701 -8.31225 -6.45101 -0.39978 0.18991 1.06629 1.41316 1.43373 1.51859 1.60981 2.36515 2.51404 2.96981 3.02211 3.33660 3.36660 3.83924 4.10205 4.26731 4.41583 4.61292 4.84454 5.05342 5.11400 5.15411 5.26201 5.36510 5.58727 5.66353 5.92774 6.26777 6.60918 6.74033 7.23928 8.79765 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.007653 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.601393 B = 3657.666972 C = 3887.073472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.090 3.910 10 C 0.159 3.841 11 N -0.342 5.342 12 O -0.122 6.122 13 C 0.023 3.977 14 C -0.195 4.195 15 C -0.049 4.049 16 C -0.121 4.121 17 C -0.070 4.070 18 C 0.087 3.913 19 O -0.495 6.495 20 H 0.272 0.728 21 H 0.050 0.950 22 H 0.021 0.979 23 H 0.144 0.856 24 H 0.183 0.817 25 H 0.188 0.812 26 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -8.508 -10.292 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.090 5.090 12 O -0.130 6.130 13 C -0.031 4.031 14 C -0.199 4.199 15 C -0.069 4.069 16 C -0.139 4.139 17 C -0.089 4.089 18 C 0.040 3.960 19 O -0.307 6.307 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.162 0.838 24 H 0.200 0.800 25 H 0.205 0.795 26 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 8.054 -8.916 -8.950 14.983 hybrid contribution 0.426 1.199 0.075 1.275 sum 8.481 -7.717 -8.875 14.500 Atomic orbital electron populations 1.70020 1.07457 1.28712 1.49504 1.25791 0.95790 1.02773 0.93685 0.85436 0.78351 0.77747 0.79185 1.18588 1.19963 1.20043 1.20985 0.92878 0.90314 1.53649 0.93067 1.17834 0.91115 0.87214 0.98655 1.25502 0.93451 0.93444 0.89606 1.79832 1.07789 1.01944 1.19413 1.89058 1.57508 1.48090 1.18310 1.21426 0.99250 0.97252 0.85160 1.20962 1.03173 0.99227 0.96524 1.20907 0.98030 0.98869 0.89123 1.21162 0.96360 0.94634 1.01754 1.21798 0.97885 0.97063 0.92189 1.17534 0.97505 0.91376 0.89577 1.84835 1.24350 1.33850 1.87689 0.91906 0.93229 0.96118 0.83847 0.79990 0.79485 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.42 13.29 21.45 0.28 -52.13 15 2 C 0.02 1.10 5.46 84.66 0.46 1.56 15 3 Si 0.97 42.58 29.54 68.60 2.03 44.61 15 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.54 -30.18 9.09 25.60 0.23 -29.94 15 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 15 9 C 0.09 4.76 5.57 29.10 0.16 4.93 15 10 C 0.16 7.73 6.65 45.04 0.30 8.03 15 11 N -0.34 -17.18 12.81 -43.47 -0.56 -17.74 15 12 O -0.12 -5.55 12.07 29.19 0.35 -5.20 15 13 C 0.02 0.90 7.43 23.06 0.17 1.07 15 14 C -0.20 -7.88 6.32 -20.23 -0.13 -8.00 15 15 C -0.05 -1.53 10.05 22.27 0.22 -1.30 15 16 C -0.12 -2.55 9.97 22.01 0.22 -2.33 15 17 C -0.07 -1.41 9.96 22.39 0.22 -1.19 15 18 C 0.09 2.45 6.72 22.56 0.15 2.61 15 19 O -0.50 -12.03 13.51 -93.14 -1.26 -13.29 15 20 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 21 H 0.05 2.58 8.14 -2.38 -0.02 2.56 15 22 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.18 2.19 8.06 -2.91 -0.02 2.17 15 25 H 0.19 2.08 8.06 -2.91 -0.02 2.05 15 26 H 0.41 5.81 9.06 -74.05 -0.67 5.14 15 Total: -1.00 -70.24 245.33 3.41 -66.83 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 0.55 Total: 1.50 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 2.02 Total: -24.58 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.27 Total: -69.87 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.91 Total: -18.49 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.24 3.41 -66.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277450.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.254 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds