Wall clock time and date at job start Mon Mar 30 2020 20:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.38264 * 119.99703 * 264.72805 * 3 2 1 5 5 C 1.38212 * 119.99907 * 179.76874 * 4 3 2 6 6 C 1.50701 * 120.00147 * 180.22818 * 5 4 3 7 7 C 1.52998 * 109.47038 * 270.27385 * 6 5 4 8 8 C 1.50694 * 109.47484 * 180.02562 * 7 6 5 9 9 H 1.08012 * 119.99689 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00493 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99565 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00049 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47161 * 59.99918 * 12 10 8 14 14 H 1.48498 * 109.46895 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47081 * 299.99616 * 12 10 8 16 16 C 1.38260 * 119.99764 * 0.50070 * 5 4 3 17 17 C 1.38211 * 120.00206 * 359.74753 * 16 5 4 18 18 C 1.38210 * 120.00293 * 84.99441 * 3 2 1 19 19 C 1.50697 * 120.00072 * 0.02562 * 18 3 2 20 20 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 24 24 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 25 25 H 1.07996 * 119.99803 * 359.97438 * 4 3 2 26 26 H 1.08992 * 109.46975 * 30.27042 * 6 5 4 27 27 H 1.09001 * 109.47121 * 150.27679 * 6 5 4 28 28 H 1.09002 * 109.47247 * 300.00125 * 7 6 5 29 29 H 1.09007 * 109.47292 * 59.99572 * 7 6 5 30 30 H 0.97004 * 119.99560 * 180.02562 * 11 10 8 31 31 H 1.08001 * 119.99847 * 179.72765 * 16 5 4 32 32 H 1.07999 * 120.00084 * 179.97438 * 17 16 5 33 33 H 1.08996 * 109.47216 * 89.99182 * 19 18 3 34 34 H 1.09003 * 109.47330 * 209.99900 * 19 18 3 35 35 H 1.09001 * 109.46871 * 329.99701 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3666 2.0358 -1.1924 5 6 2.8228 3.3405 -1.1929 6 6 3.1821 4.0126 -2.4929 7 6 4.6582 3.7602 -2.8066 8 6 5.0178 4.4327 -4.1063 9 1 4.2682 4.9848 -4.6541 10 6 6.3032 4.3426 -4.5967 11 7 7.2157 3.6701 -3.9299 12 14 6.7487 5.1758 -6.2082 13 1 6.5105 6.6370 -6.0923 14 1 8.1814 4.9309 -6.5125 15 1 5.9085 4.6224 -7.3004 16 6 2.9548 4.0271 -0.0001 17 6 2.6256 3.4105 1.1923 18 6 2.1643 2.1072 1.1923 19 6 1.8064 1.4346 2.4925 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5137 0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 2.2680 1.4979 -2.1236 26 1 2.5657 3.6061 -3.2946 27 1 3.0070 5.0851 -2.4080 28 1 5.2747 4.1666 -2.0048 29 1 4.8334 2.6876 -2.8914 30 1 8.1202 3.6070 -4.2747 31 1 3.3155 5.0451 -0.0001 32 1 2.7292 3.9467 2.1241 33 1 2.6853 0.9315 2.8954 34 1 1.4576 2.1826 3.2046 35 1 1.0172 0.7033 2.3180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:36 Heat of formation + Delta-G solvation = -15.288091 kcal Electronic energy + Delta-G solvation = -14058.301209 eV Core-core repulsion = 11826.573981 eV Total energy + Delta-G solvation = -2231.727228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 218.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37543 -35.05897 -33.37565 -32.38472 -30.21698 -29.20696 -26.82111 -24.20718 -23.57912 -21.62071 -21.00491 -19.15074 -16.33801 -15.69515 -15.33128 -14.67949 -14.44588 -13.84022 -13.73831 -13.13994 -12.71885 -12.58334 -12.42928 -12.24621 -11.95045 -11.76853 -11.54438 -11.21149 -10.95327 -10.87763 -10.60869 -10.44755 -10.33989 -9.77107 -9.52005 -9.07743 -8.35566 -8.28982 -7.83300 -5.97591 -4.00786 1.80676 1.85206 3.34600 3.38856 3.41341 4.17072 4.47875 4.95166 5.03939 5.22618 5.25387 5.37681 5.43886 5.49846 5.61070 5.65903 5.72393 5.86184 5.90914 5.93508 6.06772 6.15718 6.22806 6.28005 6.53308 6.62458 6.71118 6.91587 7.01303 7.06450 7.23322 7.52049 7.70366 7.85641 8.02639 8.43156 9.06129 9.63025 11.13430 Molecular weight = 218.14amu Principal moments of inertia in cm(-1) A = 0.046049 B = 0.005615 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.896651 B = 4985.216746 C = 5204.467337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.058 4.058 6 C -0.080 4.080 7 C 0.031 3.969 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.111 4.111 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 -5.011 10.152 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.133 4.133 5 C -0.058 4.058 6 C -0.117 4.117 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.168 4.168 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.136 0.864 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.364 -5.069 10.148 16.057 hybrid contribution 0.505 0.513 -0.914 1.163 sum -10.859 -4.557 9.234 14.965 Atomic orbital electron populations 1.21753 0.95172 1.01199 1.02167 1.20507 0.95809 0.93263 1.02537 1.19635 1.00250 0.95746 0.92813 1.20932 1.00316 0.94845 0.97237 1.20337 0.95015 0.94048 0.96393 1.20827 1.00825 0.98634 0.91423 1.19061 0.88026 0.97195 0.96366 1.21232 0.95427 1.32877 1.06563 0.92674 1.25025 0.96559 0.95450 0.97359 1.69969 1.03117 1.41466 1.38840 0.86653 0.77311 0.80004 0.84006 1.20233 1.21285 1.20230 1.21041 1.00720 1.00210 0.92051 1.20905 1.00456 0.94597 0.97692 1.19561 1.02067 0.94634 0.94480 1.20778 1.01307 1.00237 0.94448 0.92522 0.92780 0.92652 0.91275 0.91201 0.86392 0.92365 0.92331 0.96487 0.96483 0.92947 0.86354 0.86817 0.91778 0.92186 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.70 37.16 0.36 -1.16 16 2 C -0.08 -1.02 5.37 -27.88 -0.15 -1.17 16 3 C -0.08 -1.30 5.13 -104.62 -0.54 -1.83 16 4 C -0.12 -2.04 9.34 -39.58 -0.37 -2.41 16 5 C -0.06 -1.12 5.13 -104.62 -0.54 -1.65 16 6 C -0.08 -1.72 5.28 -27.88 -0.15 -1.86 16 7 C 0.03 0.81 4.95 -27.89 -0.14 0.68 16 8 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 9 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.12 -2.16 9.70 -39.58 -0.38 -2.54 16 17 C -0.12 -1.83 9.70 -39.58 -0.38 -2.22 16 18 C -0.11 -1.58 5.88 -104.63 -0.62 -2.19 16 19 C -0.11 -1.23 9.22 36.00 0.33 -0.90 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.56 6.91 -51.93 -0.36 0.20 16 23 H 0.07 0.76 6.99 -51.93 -0.36 0.40 16 24 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 25 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 26 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 27 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.06 0.65 5.43 -51.93 -0.28 0.37 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -30.74 290.70 -8.49 -39.23 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.60 Total: -2.75 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -2.98 Total: -31.06 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.74 Total: -26.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.74 -8.49 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.942 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds