Wall clock time and date at job start Mon Mar 30 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46930 * 2 1 4 4 C 1.50704 * 109.47228 * 119.99912 * 2 1 3 5 5 H 1.07998 * 119.99952 * 120.00649 * 4 2 1 6 6 C 1.37875 * 119.99974 * 300.00235 * 4 2 1 7 7 N 1.31517 * 120.00243 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99974 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47435 * 89.99924 * 8 6 4 10 10 H 1.48504 * 109.47248 * 209.99951 * 8 6 4 11 11 H 1.48504 * 109.47257 * 329.99946 * 8 6 4 12 12 C 1.50704 * 109.47201 * 240.00185 * 2 1 3 13 13 C 1.38386 * 120.03193 * 274.99441 * 12 2 1 14 14 N 1.32014 * 119.92660 * 179.97438 * 13 12 2 15 15 C 1.32394 * 120.22714 * 0.02562 * 14 13 12 16 16 C 1.38346 * 119.84437 * 359.97438 * 15 14 13 17 17 N 1.32011 * 120.03321 * 94.97719 * 12 2 1 18 18 C 1.51656 * 109.82422 * 180.16397 * 16 15 14 19 19 C 1.54348 * 105.02626 * 16.91065 * 18 16 15 20 20 C 1.51348 * 130.41244 * 180.02562 * 15 14 13 21 21 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47002 * 299.99793 * 1 2 3 23 23 H 1.08993 * 109.47068 * 60.00257 * 1 2 3 24 24 H 0.96999 * 119.99987 * 179.97438 * 7 6 4 25 25 H 1.08002 * 120.04062 * 359.96039 * 13 12 2 26 26 H 1.09001 * 110.25138 * 258.09037 * 18 16 15 27 27 H 1.09004 * 110.48963 * 135.85112 * 18 16 15 28 28 H 1.09002 * 110.81804 * 215.56383 * 19 18 16 29 29 H 1.09002 * 110.81614 * 92.22396 * 19 18 16 30 30 H 1.09002 * 110.30518 * 43.88964 * 20 15 14 31 31 H 1.09006 * 110.38639 * 281.78374 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6035 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5439 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4882 -2.5653 3.7122 12 6 2.0324 -0.7104 -1.2305 13 6 2.1649 -2.0879 -1.2294 14 7 2.6047 -2.7081 -2.3086 15 6 2.9202 -2.0167 -3.3927 16 6 2.7876 -0.6396 -3.3938 17 7 2.3461 -0.0193 -2.3106 18 6 3.2049 -0.0838 -4.7417 19 6 3.1940 -1.2971 -5.6956 20 6 3.4378 -2.4815 -4.7368 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7089 1.1613 3.4845 25 1 1.9091 -2.6550 -0.3466 26 1 4.2070 0.3407 -4.6810 27 1 2.4939 0.6700 -5.0803 28 1 3.9966 -1.2204 -6.4292 29 1 2.2273 -1.3924 -6.1901 30 1 2.8853 -3.3594 -5.0719 31 1 4.5028 -2.7059 -4.6766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:40 Heat of formation + Delta-G solvation = 29.584452 kcal Electronic energy + Delta-G solvation = -14274.996886 eV Core-core repulsion = 11941.675133 eV Total energy + Delta-G solvation = -2333.321752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79370 -36.64351 -34.37923 -33.38630 -30.97971 -28.24500 -27.62865 -25.31859 -23.70249 -22.65506 -20.69295 -19.87542 -17.37175 -16.06870 -15.92063 -15.20441 -14.74869 -13.98441 -13.71492 -13.15830 -12.96144 -12.55171 -12.28814 -11.92885 -11.56366 -11.23384 -11.12994 -10.96692 -10.84968 -10.80644 -10.61037 -10.26543 -10.02537 -9.95478 -9.07640 -8.51968 -8.10149 -8.06601 -6.10360 -4.18762 1.47961 1.85155 3.26900 3.33752 3.36651 4.14444 4.29717 4.37276 4.44627 4.92126 4.93759 4.98945 5.22381 5.35849 5.67799 5.70699 5.82520 5.86229 5.88674 6.06782 6.12586 6.25907 6.28733 6.78608 6.92872 7.06400 7.23921 7.57686 7.75291 7.97352 8.03728 8.21825 8.60458 8.82452 9.46895 10.96029 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.052159 B = 0.007331 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.688587 B = 3818.713081 C = 4096.068148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.089 3.911 3 H 0.050 0.950 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.134 3.866 13 C 0.059 3.941 14 N -0.443 5.443 15 C 0.026 3.974 16 C 0.059 3.941 17 N -0.449 5.449 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.060 4.060 21 H 0.028 0.972 22 H 0.092 0.908 23 H 0.012 0.988 24 H 0.263 0.737 25 H 0.177 0.823 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -3.608 -12.204 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C -0.006 4.006 13 C -0.101 4.101 14 N -0.157 5.157 15 C -0.114 4.114 16 C -0.081 4.081 17 N -0.164 5.164 18 C -0.103 4.103 19 C -0.155 4.155 20 C -0.098 4.098 21 H 0.048 0.952 22 H 0.111 0.889 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.194 0.806 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.919 -3.497 -12.066 12.897 hybrid contribution 0.321 -0.416 1.041 1.166 sum 3.240 -3.914 -11.025 12.140 Atomic orbital electron populations 1.21740 0.96515 0.99463 1.00885 1.17815 0.93091 0.96386 0.85813 0.93168 1.21120 1.32111 1.12958 0.89873 0.92010 1.24922 0.94747 0.94888 0.99006 1.69884 1.36059 1.22569 1.23746 0.86518 0.78637 0.80100 0.82365 1.20594 1.21055 1.19689 1.23196 0.90825 0.92593 0.94017 1.23724 0.96483 0.94155 0.95782 1.67629 1.08441 1.40661 0.99006 1.22472 1.00462 0.92788 0.95664 1.22732 0.96957 0.92976 0.95437 1.67664 1.09262 1.40700 0.98739 1.20902 1.02216 0.98111 0.89058 1.22300 1.02666 0.93592 0.96947 1.20766 1.01259 0.98699 0.89118 0.95244 0.88921 0.96927 0.92682 0.80614 0.89520 0.89847 0.89874 0.90696 0.90159 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.95 37.16 0.33 -2.77 16 2 C 0.09 2.26 2.64 -92.92 -0.24 2.02 16 3 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 4 C -0.52 -13.90 7.90 -34.44 -0.27 -14.17 16 5 H 0.06 1.60 6.35 -52.49 -0.33 1.27 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.13 3.12 5.79 -82.46 -0.48 2.64 16 13 C 0.06 1.29 10.03 -17.42 -0.17 1.12 16 14 N -0.44 -9.05 10.49 -9.06 -0.10 -9.15 16 15 C 0.03 0.47 7.32 -81.99 -0.60 -0.13 16 16 C 0.06 1.10 7.32 -81.84 -0.60 0.50 16 17 N -0.45 -9.98 10.41 -5.24 -0.05 -10.03 16 18 C -0.06 -0.84 6.80 -26.71 -0.18 -1.02 16 19 C -0.12 -1.17 7.07 -25.33 -0.18 -1.35 16 20 C -0.06 -0.75 6.77 -26.87 -0.18 -0.93 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.18 3.73 6.76 -52.49 -0.35 3.38 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -29.57 259.72 -7.24 -36.81 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.94 Total: -0.90 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.67 Total: -12.39 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.48 Total: -43.13 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.57 -7.24 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.399 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds