Wall clock time and date at job start Mon Mar 30 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40280 * 126.73518 * 2 1 4 4 C 1.35232 * 107.21123 * 180.12417 * 3 2 1 5 5 O 1.34115 * 109.03707 * 359.61795 * 4 3 2 6 6 C 1.34925 * 109.42822 * 0.24353 * 5 4 3 7 7 C 1.46213 * 126.10393 * 180.02562 * 6 5 4 8 8 N 1.32783 * 126.33064 * 179.66344 * 7 6 5 9 9 N 1.28506 * 110.12548 * 179.88225 * 8 7 6 10 10 C 1.33370 * 109.87985 * 0.39355 * 9 8 7 11 11 C 1.39582 * 126.50779 * 179.72913 * 10 9 8 12 12 H 1.07993 * 120.00330 * 174.33377 * 11 10 9 13 13 C 1.40160 * 119.99322 * 354.33284 * 11 10 9 14 14 N 1.30745 * 120.00167 * 6.04288 * 13 11 10 15 15 Si 1.86805 * 119.99567 * 186.03863 * 13 11 10 16 16 H 1.48498 * 109.46736 * 94.98258 * 15 13 11 17 17 H 1.48496 * 109.46925 * 214.98238 * 15 13 11 18 18 H 1.48495 * 109.47155 * 334.98383 * 15 13 11 19 19 N 1.37450 * 126.33267 * 359.97438 * 7 6 5 20 20 H 0.96996 * 127.16991 * 359.91886 * 19 7 6 21 21 H 1.09001 * 109.46854 * 270.29508 * 1 2 3 22 22 H 1.08997 * 109.46721 * 30.30009 * 1 2 3 23 23 H 1.08998 * 109.46922 * 150.29538 * 1 2 3 24 24 H 1.08006 * 126.39027 * 0.02562 * 3 2 1 25 25 H 1.08003 * 125.48140 * 179.88537 * 4 3 2 26 26 H 0.97000 * 120.00132 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3461 1.1242 0.0000 4 6 3.6206 0.6723 -0.0028 5 8 3.6093 -0.6688 0.0039 6 6 2.3331 -1.1068 0.0058 7 6 1.9016 -2.5038 0.0132 8 7 0.6474 -2.9398 0.0213 9 7 0.6260 -4.2247 0.0237 10 6 1.8725 -4.6991 0.0259 11 6 2.2495 -6.0430 0.0341 12 1 3.2913 -6.3121 -0.0572 13 6 1.2757 -7.0431 0.1609 14 7 0.0075 -6.7255 0.1527 15 14 1.7901 -8.8298 0.3417 16 1 1.8377 -9.1878 1.7821 17 1 0.8077 -9.7004 -0.3526 18 1 3.1338 -9.0214 -0.2607 19 7 2.7193 -3.6086 0.0191 20 1 3.6892 -3.6199 0.0180 21 1 -0.3633 0.0053 1.0277 22 1 -0.3633 0.8873 -0.5185 23 1 -0.3633 -0.8926 -0.5092 24 1 2.0326 2.1578 0.0004 25 1 4.5054 1.2917 -0.0053 26 1 -0.6664 -7.4176 0.2408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161339369.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:51 Heat of formation + Delta-G solvation = 69.151492 kcal Electronic energy + Delta-G solvation = -13980.377659 eV Core-core repulsion = 11447.512656 eV Total energy + Delta-G solvation = -2532.865002 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.95871 -40.50168 -33.93381 -33.53450 -31.94524 -30.66902 -28.70619 -26.85359 -25.31115 -21.87621 -20.99656 -20.45827 -19.34797 -17.74923 -16.49002 -15.89257 -15.67539 -14.93839 -14.07232 -13.83573 -13.44203 -12.84159 -12.51386 -12.45768 -11.88200 -11.56800 -11.41375 -11.21611 -11.00876 -10.45279 -9.80737 -9.67237 -9.22372 -9.17160 -8.62256 -8.61649 -7.14391 -6.78345 -4.70652 1.80929 2.82419 2.97169 3.01440 3.05594 3.32348 3.70462 3.79489 4.29002 4.44676 5.21889 5.22536 5.31877 5.62296 5.93472 6.09946 6.32645 6.41478 6.56750 6.73522 6.74028 6.78060 7.03921 7.21078 7.29731 7.66072 7.97498 8.06753 8.57972 8.87193 10.13855 10.51291 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.065109 B = 0.006981 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.946817 B = 4010.205054 C = 4421.882041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.171 4.171 3 C -0.199 4.199 4 C -0.070 4.070 5 O -0.181 6.181 6 C 0.102 3.898 7 C 0.107 3.893 8 N -0.239 5.239 9 N -0.326 5.326 10 C 0.347 3.653 11 C -0.441 4.441 12 H 0.088 0.912 13 C 0.077 3.923 14 N -0.727 5.727 15 Si 0.924 3.076 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.261 1.261 19 N -0.640 5.640 20 H 0.408 0.592 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.144 0.856 25 H 0.197 0.803 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 6.718 0.060 8.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.175 4.175 3 C -0.218 4.218 4 C -0.139 4.139 5 O -0.076 6.076 6 C 0.050 3.950 7 C -0.150 4.150 8 N -0.089 5.089 9 N -0.178 5.178 10 C 0.106 3.894 11 C -0.481 4.481 12 H 0.106 0.894 13 C -0.150 4.150 14 N -0.350 5.350 15 Si 0.748 3.252 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.185 1.185 19 N -0.261 5.261 20 H 0.244 0.756 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.162 0.838 25 H 0.213 0.787 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.444 6.495 0.067 7.352 hybrid contribution 2.255 -0.569 0.110 2.328 sum 5.698 5.926 0.177 8.223 Atomic orbital electron populations 1.20143 0.88836 1.02620 1.01799 1.20488 0.97089 0.90306 1.09650 1.21474 0.92607 0.99405 1.08301 1.23837 0.99374 0.80402 1.10264 1.83985 1.28793 1.22639 1.72195 1.18993 0.80310 0.90248 1.05492 1.20333 0.89102 0.83748 1.21804 1.74496 1.14658 1.07356 1.12352 1.75722 1.15690 0.97502 1.28907 1.21484 0.85227 0.88780 0.93920 1.18214 0.95554 0.86556 1.47772 0.89383 1.25862 0.94281 1.01594 0.93260 1.69968 1.00753 1.35598 1.28681 0.86039 0.79582 0.80288 0.79296 1.19291 1.19820 1.18525 1.44141 1.09063 1.05983 1.66911 0.75575 0.92127 0.92909 0.89556 0.83808 0.78672 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.96 36.01 0.36 -1.01 15 2 C -0.17 -3.25 6.25 -103.90 -0.65 -3.90 15 3 C -0.20 -3.07 10.83 -39.88 -0.43 -3.50 15 4 C -0.07 -1.04 12.07 29.66 0.36 -0.68 15 5 O -0.18 -3.40 10.67 4.48 0.05 -3.35 15 6 C 0.10 2.19 7.27 -36.43 -0.27 1.92 15 7 C 0.11 2.64 8.08 -153.32 -1.24 1.40 15 8 N -0.24 -6.51 10.40 32.43 0.34 -6.17 15 9 N -0.33 -9.58 10.49 31.21 0.33 -9.25 15 10 C 0.35 9.47 7.70 -154.92 -1.19 8.28 15 11 C -0.44 -11.36 9.43 -38.36 -0.36 -11.72 15 12 H 0.09 2.05 7.86 -52.49 -0.41 1.63 15 13 C 0.08 1.90 5.49 -17.29 -0.09 1.81 15 14 N -0.73 -19.28 11.95 55.56 0.66 -18.62 15 15 Si 0.92 17.89 29.57 -169.99 -5.03 12.86 15 16 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 19 N -0.64 -15.45 6.40 -9.94 -0.06 -15.51 15 20 H 0.41 8.39 8.96 -40.82 -0.37 8.02 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.09 1.74 6.64 -51.93 -0.34 1.40 15 24 H 0.14 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.20 1.94 8.06 -52.48 -0.42 1.52 15 26 H 0.28 6.71 8.29 -40.82 -0.34 6.37 15 LS Contribution 242.04 15.07 3.65 3.65 Total: -1.00 -31.04 242.04 -5.53 -36.57 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -1.95 Total: 7.22 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.52 Total: -7.41 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 1.26 Total: -49.55 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: 0.05 Total: -3.35 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.04 -5.53 -36.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161339369.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.723 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds