Wall clock time and date at job start Mon Mar 30 2020 20:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35743 * 116.99921 * 2 1 4 4 C 1.39324 * 119.95387 * 180.02562 * 3 2 1 5 5 N 1.31856 * 120.52571 * 180.02562 * 4 3 2 6 6 C 1.32809 * 120.04150 * 0.02562 * 5 4 3 7 7 N 1.37983 * 132.68660 * 179.97438 * 6 5 4 8 8 H 0.97001 * 124.68092 * 0.02562 * 7 6 5 9 9 C 1.35671 * 110.64418 * 180.02562 * 7 6 5 10 10 C 1.38890 * 109.28687 * 359.97438 * 9 7 6 11 11 C 1.40957 * 126.92831 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 179.97438 * 11 10 9 13 13 C 1.39768 * 120.00295 * 359.97438 * 11 10 9 14 14 N 1.31041 * 119.99934 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00233 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47302 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47546 * 120.00188 * 15 13 11 18 18 H 1.48512 * 109.47169 * 239.99917 * 15 13 11 19 19 C 1.40505 * 119.41063 * 359.97438 * 6 5 4 20 20 N 1.32362 * 119.95103 * 0.21057 * 3 2 1 21 21 H 1.08999 * 109.47073 * 299.99958 * 1 2 3 22 22 H 1.09010 * 109.47193 * 59.99727 * 1 2 3 23 23 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.73717 * 0.02562 * 4 3 2 25 25 H 1.08000 * 125.35587 * 179.97438 * 9 7 6 26 26 H 0.97001 * 120.00090 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4366 1.2813 -0.0005 5 7 4.0469 2.4501 0.0000 6 6 3.3355 3.5716 0.0015 7 7 3.6909 4.9049 0.0028 8 1 4.6038 5.2328 0.0024 9 6 2.5874 5.6941 0.0047 10 6 1.4516 4.8946 0.0042 11 6 0.1105 5.3285 0.0052 12 1 -0.6912 4.6048 0.0042 13 6 -0.1818 6.6953 0.0075 14 7 0.7908 7.5734 0.0092 15 14 -1.9591 7.2703 0.0095 16 1 -2.8611 6.0906 0.0077 17 1 -2.2139 8.0869 1.2234 18 1 -2.2154 8.0906 -1.2016 19 6 1.9324 3.4987 0.0020 20 7 1.3234 2.3189 0.0042 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 4.0199 0.3724 -0.0014 25 1 2.5914 6.7741 0.0064 26 1 0.5880 8.5219 0.0104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214514979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:02 Heat of formation + Delta-G solvation = 37.768932 kcal Electronic energy + Delta-G solvation = -14149.331878 eV Core-core repulsion = 11615.106025 eV Total energy + Delta-G solvation = -2534.225852 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.64464 -38.42606 -36.36801 -33.79592 -32.90850 -29.36851 -28.68973 -26.43520 -25.23888 -22.97973 -22.07011 -19.77892 -18.05805 -17.35645 -16.32977 -15.85531 -15.48282 -15.01583 -14.40405 -13.94478 -13.77516 -13.04025 -12.67620 -11.80956 -11.78149 -11.43935 -11.30933 -11.19217 -10.64035 -10.61130 -10.34485 -10.12775 -9.94139 -9.35639 -8.16434 -7.24664 -7.11026 -6.65666 -4.16968 1.83921 2.14276 3.02105 3.12585 3.19357 3.63472 3.96855 3.99200 4.06171 4.68434 5.02720 5.32129 5.40437 5.57978 5.70680 5.76441 6.03068 6.07114 6.52265 6.67268 7.10266 7.22792 7.51823 7.89935 8.01705 8.19075 8.30600 8.74612 8.88311 8.96749 8.98998 10.31940 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.009802 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.162555 B = 2855.985728 C = 3726.003596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.315 6.315 3 C 0.205 3.795 4 C 0.057 3.943 5 N -0.443 5.443 6 C 0.186 3.814 7 N -0.561 5.561 8 H 0.403 0.597 9 C -0.064 4.064 10 C 0.030 3.970 11 C -0.403 4.403 12 H 0.079 0.921 13 C 0.054 3.946 14 N -0.830 5.830 15 Si 0.923 3.077 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.066 3.934 20 N -0.453 5.453 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.162 0.838 25 H 0.207 0.793 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -5.046 -0.012 5.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.222 6.222 3 C 0.015 3.985 4 C -0.112 4.112 5 N -0.163 5.163 6 C -0.053 4.053 7 N -0.167 5.167 8 H 0.237 0.763 9 C -0.191 4.191 10 C 0.024 3.976 11 C -0.436 4.436 12 H 0.098 0.902 13 C -0.157 4.157 14 N -0.461 5.461 15 Si 0.748 3.252 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.075 4.075 20 N -0.181 5.181 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.179 0.821 25 H 0.223 0.777 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.929 -4.858 -0.007 4.946 hybrid contribution -0.593 0.500 -0.001 0.775 sum 0.337 -4.358 -0.008 4.371 Atomic orbital electron populations 1.22684 0.78558 1.01643 1.02345 1.86136 1.21840 1.24497 1.89759 1.20364 0.90434 0.85155 1.02571 1.22040 0.89424 0.95013 1.04749 1.67133 1.38749 0.96395 1.14036 1.19106 0.92003 0.86332 1.07893 1.41244 1.09108 1.01657 1.64725 0.76261 1.23599 0.81982 0.97178 1.16323 1.17942 0.93855 0.84135 1.01689 1.18872 0.91419 0.91661 1.41606 0.90230 1.25712 0.99562 0.96343 0.94033 1.69356 1.32907 1.02758 1.41050 0.85996 0.81883 0.79075 0.78209 1.18711 1.20174 1.20177 1.20693 0.90135 0.92296 1.04378 1.67138 1.39456 0.97394 1.14081 0.92774 0.92790 0.89569 0.82081 0.77726 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.39 101.05 1.05 1.73 15 2 O -0.32 -5.81 10.49 -18.94 -0.20 -6.01 15 3 C 0.20 4.35 7.49 -16.92 -0.13 4.23 15 4 C 0.06 1.14 11.15 -17.14 -0.19 0.95 15 5 N -0.44 -9.63 10.51 -11.95 -0.13 -9.75 15 6 C 0.19 4.38 8.38 -155.13 -1.30 3.08 15 7 N -0.56 -12.18 5.98 -11.24 -0.07 -12.25 15 8 H 0.40 7.16 8.96 -40.82 -0.37 6.80 15 9 C -0.06 -1.54 10.89 -15.61 -0.17 -1.71 15 10 C 0.03 0.81 6.10 -104.79 -0.64 0.17 15 11 C -0.40 -10.80 9.43 -37.98 -0.36 -11.16 15 12 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 13 C 0.05 1.34 5.49 -17.32 -0.10 1.25 15 14 N -0.83 -20.46 10.33 55.54 0.57 -19.88 15 15 Si 0.92 19.00 29.56 -169.99 -5.02 13.98 15 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 19 C 0.07 1.70 7.48 -82.77 -0.62 1.08 15 20 N -0.45 -10.97 9.42 -9.58 -0.09 -11.06 15 21 H 0.05 0.88 8.11 -51.93 -0.42 0.46 15 22 H 0.05 0.87 8.11 -51.92 -0.42 0.45 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.16 2.54 8.06 -52.48 -0.42 2.11 15 25 H 0.21 4.96 5.68 -52.49 -0.30 4.67 15 26 H 0.28 6.24 8.30 -40.82 -0.34 5.90 15 LS Contribution 237.62 15.07 3.58 3.58 Total: -1.00 -28.81 237.62 -5.70 -34.51 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -1.90 Total: 7.27 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.45 Total: -0.39 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.29 Total: -52.94 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.20 Total: -6.01 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.81 -5.70 -34.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214514979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.279 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds