Wall clock time and date at job start Mon Mar 30 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35660 * 124.69144 * 2 1 4 4 C 1.38905 * 109.27598 * 179.97438 * 3 2 1 5 5 C 1.40889 * 126.93297 * 180.25921 * 4 3 2 6 6 H 1.07999 * 120.00427 * 179.68973 * 5 4 3 7 7 C 1.39727 * 119.99740 * 359.68748 * 5 4 3 8 8 N 1.31061 * 120.00169 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00111 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47187 * 59.99952 * 9 7 5 11 11 H 1.48501 * 109.47293 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47385 * 300.00153 * 9 7 5 13 13 C 1.47656 * 106.13843 * 0.02562 * 4 3 2 14 14 C 1.38142 * 124.69506 * 179.97438 * 2 1 3 15 15 C 1.39108 * 132.78352 * 0.02562 * 14 2 1 16 16 C 1.37920 * 120.02505 * 179.97438 * 15 14 2 17 17 C 1.38583 * 120.64630 * 0.04569 * 16 15 14 18 18 C 1.38178 * 120.22160 * 359.95904 * 17 16 15 19 19 F 1.35105 * 120.18134 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47335 * 269.99968 * 1 2 3 21 21 H 1.09001 * 109.47514 * 30.00400 * 1 2 3 22 22 H 1.09002 * 109.47154 * 150.00102 * 1 2 3 23 23 H 1.08001 * 125.35862 * 359.97438 * 3 2 1 24 24 H 0.96990 * 120.00274 * 179.97438 * 8 7 5 25 25 H 1.08003 * 119.99069 * 0.02646 * 15 14 2 26 26 H 1.08001 * 119.67727 * 180.02562 * 16 15 14 27 27 H 1.08005 * 119.88930 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2371 1.1154 0.0000 4 6 3.5762 0.7462 0.0006 5 6 4.6916 1.6068 0.0059 6 1 5.6905 1.1962 0.0108 7 6 4.5055 2.9916 0.0047 8 7 3.2934 3.4900 -0.0019 9 14 5.9844 4.1328 0.0124 10 1 6.8105 3.8808 -1.1957 11 1 5.5210 5.5437 0.0103 12 1 6.7975 3.8812 1.2293 13 6 3.5948 -0.7302 0.0003 14 6 2.2513 -1.1358 0.0005 15 6 1.9497 -2.4938 0.0007 16 6 2.9658 -3.4264 0.0007 17 6 4.2924 -3.0257 0.0015 18 6 4.6130 -1.6816 0.0015 19 9 5.9066 -1.2918 0.0017 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.8686 2.1306 -0.0004 24 1 3.1642 4.4512 -0.0023 25 1 0.9195 -2.8180 -0.0001 26 1 2.7252 -4.4793 0.0004 27 1 5.0784 -3.7664 0.0019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214515212.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:05 Heat of formation + Delta-G solvation = -12.065058 kcal Electronic energy + Delta-G solvation = -14256.678794 eV Core-core repulsion = 11700.372016 eV Total energy + Delta-G solvation = -2556.306778 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.59079 -41.47973 -37.45182 -35.66164 -33.02666 -30.61276 -29.51042 -28.43108 -25.68357 -23.19612 -22.26606 -21.19947 -19.14589 -17.55318 -17.35814 -16.76778 -16.45075 -16.11266 -15.90539 -15.61291 -15.28431 -14.42157 -13.76927 -13.46207 -13.37155 -13.12989 -12.96199 -12.93723 -12.46812 -12.26120 -11.83365 -11.70340 -11.52827 -11.17204 -10.03204 -8.82772 -8.45694 -8.45161 -6.02601 0.35268 0.81917 1.37547 1.37622 1.49474 2.22261 2.26149 2.47729 2.94345 3.52071 3.67258 4.09715 4.19058 4.28661 4.49380 4.57719 4.69196 4.74284 4.82293 5.11126 5.24592 5.44036 5.47352 5.64140 5.83813 5.87322 6.17779 6.48012 6.68137 7.02272 7.11970 7.20623 8.52967 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.029939 B = 0.011507 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.016625 B = 2432.699084 C = 3352.566119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.481 5.481 3 C -0.102 4.102 4 C -0.022 4.022 5 C -0.457 4.457 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.854 5.854 9 Si 0.986 3.014 10 H -0.268 1.268 11 H -0.263 1.263 12 H -0.268 1.268 13 C -0.215 4.215 14 C 0.097 3.903 15 C -0.152 4.152 16 C -0.077 4.077 17 C -0.212 4.212 18 C 0.114 3.886 19 F -0.160 7.160 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.096 0.904 23 H 0.182 0.818 24 H 0.282 0.718 25 H 0.149 0.851 26 H 0.171 0.829 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -7.734 -0.081 9.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.164 5.164 3 C -0.225 4.225 4 C -0.027 4.027 5 C -0.490 4.490 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.485 5.485 9 Si 0.808 3.192 10 H -0.193 1.193 11 H -0.187 1.187 12 H -0.193 1.193 13 C -0.222 4.222 14 C -0.014 4.014 15 C -0.174 4.174 16 C -0.096 4.096 17 C -0.232 4.232 18 C 0.094 3.906 19 F -0.139 7.139 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.199 0.801 24 H 0.092 0.908 25 H 0.166 0.834 26 H 0.189 0.811 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.343 -7.352 -0.083 9.089 hybrid contribution 1.040 1.037 0.021 1.469 sum -4.303 -6.315 -0.062 7.642 Atomic orbital electron populations 1.21981 0.76193 1.04546 1.03107 1.43715 1.06514 1.03719 1.62491 1.23138 0.89785 0.90528 1.19085 1.18473 0.93669 0.88476 1.02073 1.18975 0.92903 0.91592 1.45510 0.92381 1.26470 0.99939 0.99495 0.93391 1.69489 1.23039 1.14246 1.41762 0.85175 0.77807 0.76832 0.79357 1.19251 1.18733 1.19272 1.19758 0.93687 0.94965 1.13804 1.18400 0.88944 0.89520 1.04559 1.20347 1.01071 0.87779 1.08162 1.20861 0.89920 1.00308 0.98495 1.20945 0.99328 0.91680 1.11281 1.17669 0.76323 0.93426 1.03133 1.91351 1.36008 1.92447 1.94060 0.91144 0.90061 0.88583 0.80125 0.90788 0.83364 0.81142 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 10.97 127.77 1.40 3.91 15 2 N -0.48 -21.40 3.15 -535.96 -1.69 -23.09 15 3 C -0.10 -5.49 10.32 84.26 0.87 -4.62 15 4 C -0.02 -1.29 6.10 -19.98 -0.12 -1.41 15 5 C -0.46 -27.52 9.35 23.28 0.22 -27.30 15 6 H 0.06 3.53 7.13 -2.91 -0.02 3.51 15 7 C 0.01 0.80 5.49 85.17 0.47 1.26 15 8 N -0.85 -46.66 10.33 21.80 0.23 -46.43 15 9 Si 0.99 42.57 29.56 68.60 2.03 44.60 15 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 11 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 13 C -0.21 -11.34 6.31 -20.01 -0.13 -11.46 15 14 C 0.10 4.34 6.77 38.87 0.26 4.60 15 15 C -0.15 -5.16 9.88 22.40 0.22 -4.94 15 16 C -0.08 -2.33 10.01 22.28 0.22 -2.11 15 17 C -0.21 -7.70 10.02 22.34 0.22 -7.48 15 18 C 0.11 5.43 7.33 22.52 0.17 5.60 15 19 F -0.16 -8.01 16.50 44.97 0.74 -7.26 15 20 H 0.07 1.90 8.14 -2.39 -0.02 1.89 15 21 H 0.08 2.32 8.13 -2.39 -0.02 2.30 15 22 H 0.10 2.29 7.94 -2.39 -0.02 2.27 15 23 H 0.18 10.06 5.68 -2.91 -0.02 10.04 15 24 H 0.28 13.96 8.30 -92.72 -0.77 13.19 15 25 H 0.15 3.76 7.95 -2.91 -0.02 3.74 15 26 H 0.17 3.42 8.06 -2.91 -0.02 3.40 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -68.87 242.81 6.30 -62.58 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.19 Total: 13.55 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 3.80 Total: -43.94 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.46 Total: -69.52 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.74 Total: -7.26 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -68.87 6.30 -62.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214515212.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.511 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds