Wall clock time and date at job start Mon Mar 30 2020 20:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38279 * 125.61324 * 2 1 4 4 C 1.39937 * 125.70162 * 0.05028 * 3 2 1 5 5 H 1.08003 * 119.99496 * 359.97438 * 4 3 2 6 6 C 1.40171 * 120.00648 * 179.97438 * 4 3 2 7 7 N 1.30757 * 119.99816 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00484 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47095 * 89.99378 * 8 6 4 10 10 H 1.48495 * 109.47209 * 209.99707 * 8 6 4 11 11 H 1.48507 * 109.46544 * 329.99523 * 8 6 4 12 12 C 1.39134 * 108.60461 * 179.79697 * 3 2 1 13 13 C 1.40932 * 107.51008 * 0.36475 * 12 3 2 14 14 C 1.40555 * 133.07042 * 179.97438 * 13 12 3 15 15 C 1.36404 * 119.84452 * 179.68338 * 14 13 12 16 16 C 1.38950 * 120.61476 * 0.02562 * 15 14 13 17 17 C 1.38134 * 120.66797 * 359.97438 * 16 15 14 18 18 F 1.35093 * 120.07385 * 180.02562 * 17 16 15 19 19 C 1.38149 * 125.61275 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.46982 * 269.96819 * 1 2 3 21 21 H 1.09002 * 109.47203 * 29.97171 * 1 2 3 22 22 H 1.09003 * 109.47173 * 149.97088 * 1 2 3 23 23 H 0.96998 * 120.00385 * 180.02562 * 7 6 4 24 24 H 1.07994 * 126.24222 * 180.26753 * 12 3 2 25 25 H 1.07998 * 120.07459 * 359.66171 * 14 13 12 26 26 H 1.07998 * 119.68678 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.66452 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1242 0.0000 4 6 1.8219 2.4498 0.0010 5 1 0.7628 2.6616 0.0014 6 6 2.7471 3.5027 0.0014 7 7 4.0293 3.2463 0.0014 8 14 2.1486 5.2722 0.0020 9 1 1.9898 5.7406 1.4022 10 1 3.1386 6.1299 -0.6976 11 1 0.8415 5.3528 -0.6982 12 6 3.6006 0.7172 0.0047 13 6 3.6130 -0.6921 -0.0009 14 6 4.6482 -1.6429 -0.0003 15 6 4.3477 -2.9734 -0.0004 16 6 3.0254 -3.4003 -0.0017 17 6 1.9899 -2.4861 -0.0023 18 9 0.7087 -2.9144 -0.0030 19 6 2.2694 -1.1231 -0.0005 20 1 -0.3633 -0.0006 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8897 -0.5143 23 1 4.6697 3.9748 0.0021 24 1 4.4659 1.3633 0.0099 25 1 5.6790 -1.3207 -0.0001 26 1 5.1451 -3.7018 0.0005 27 1 2.8050 -4.4576 -0.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214515368.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:07 Heat of formation + Delta-G solvation = -1.739152 kcal Electronic energy + Delta-G solvation = -14247.117209 eV Core-core repulsion = 11691.258196 eV Total energy + Delta-G solvation = -2555.859013 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.01227 -39.72770 -35.96151 -33.80717 -31.21391 -29.19930 -28.47414 -25.67341 -24.80514 -21.32555 -20.50784 -19.39960 -17.05657 -16.34388 -15.84061 -15.15429 -14.94607 -14.73527 -13.85734 -13.79975 -13.58388 -12.53713 -12.14438 -12.06108 -11.78706 -11.61717 -11.42492 -11.13437 -10.79996 -10.46492 -10.28912 -10.04815 -9.91911 -9.45346 -8.30031 -7.25710 -6.82143 -6.41839 -4.51164 2.10507 2.62234 2.91951 2.95631 2.99589 3.71340 3.94062 4.10669 4.87006 5.24997 5.27002 5.65498 5.75452 5.86130 5.98614 6.14206 6.27146 6.53312 6.76151 6.79993 6.87388 7.11268 7.39263 7.54296 7.63322 7.73616 7.85066 8.19172 8.51611 8.61778 8.82331 9.03056 10.01922 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.043419 B = 0.009255 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.718197 B = 3024.709268 C = 3654.282910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.512 5.512 3 C 0.268 3.732 4 C -0.438 4.438 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.775 5.775 8 Si 0.930 3.070 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.262 1.262 12 C -0.321 4.321 13 C -0.025 4.025 14 C -0.142 4.142 15 C -0.115 4.115 16 C -0.219 4.219 17 C 0.093 3.907 18 F -0.163 7.163 19 C 0.004 3.996 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.283 0.717 24 H 0.170 0.830 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -1.983 -0.092 2.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.202 5.202 3 C 0.163 3.837 4 C -0.470 4.470 5 H 0.097 0.903 6 C -0.148 4.148 7 N -0.399 5.399 8 Si 0.753 3.247 9 H -0.192 1.192 10 H -0.198 1.198 11 H -0.186 1.186 12 C -0.343 4.343 13 C -0.031 4.031 14 C -0.161 4.161 15 C -0.135 4.135 16 C -0.239 4.239 17 C 0.071 3.929 18 F -0.142 7.142 19 C -0.100 4.100 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.186 0.814 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.193 -1.864 -0.097 2.880 hybrid contribution -0.602 0.563 0.022 0.824 sum -2.795 -1.301 -0.075 3.083 Atomic orbital electron populations 1.21583 0.79324 1.02539 1.01270 1.44094 1.04223 1.04444 1.67457 1.18238 0.88401 0.85140 0.91958 1.18742 0.94760 0.88419 1.45109 0.90286 1.25827 0.94301 1.01992 0.92658 1.69684 1.02128 1.34461 1.33644 0.85956 0.79570 0.79772 0.79362 1.19212 1.19827 1.18579 1.21832 0.96964 0.90290 1.25231 1.18403 0.89976 0.95220 0.99461 1.20189 0.97519 0.91920 1.06485 1.20046 0.94600 0.95288 1.03517 1.20171 0.91964 0.97202 1.14525 1.16729 0.77821 0.89473 1.08861 1.91325 1.37326 1.90706 1.94837 1.18147 0.92033 0.86185 1.13612 0.93187 0.90740 0.91622 0.90547 0.81358 0.87336 0.87395 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.60 59.84 0.63 2.52 15 2 N -0.51 -12.55 3.24 -118.81 -0.39 -12.94 15 3 C 0.27 7.08 6.65 -83.99 -0.56 6.52 15 4 C -0.44 -10.98 8.96 -38.22 -0.34 -11.33 15 5 H 0.08 1.84 7.06 -52.48 -0.37 1.47 15 6 C 0.07 1.71 5.50 -17.28 -0.10 1.62 15 7 N -0.77 -19.00 10.18 55.56 0.57 -18.43 15 8 Si 0.93 17.53 29.56 -169.99 -5.03 12.51 15 9 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 11 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 12 C -0.32 -8.65 9.80 -38.23 -0.37 -9.02 15 13 C -0.03 -0.64 6.14 -106.92 -0.66 -1.29 15 14 C -0.14 -3.12 10.08 -39.37 -0.40 -3.52 15 15 C -0.11 -2.27 9.96 -39.98 -0.40 -2.66 15 16 C -0.22 -4.46 10.00 -39.36 -0.39 -4.85 15 17 C 0.09 2.12 7.32 -39.29 -0.29 1.83 15 18 F -0.16 -3.48 15.79 2.25 0.04 -3.45 15 19 C 0.00 0.09 6.82 -83.60 -0.57 -0.48 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.07 1.35 7.26 -51.93 -0.38 0.98 15 22 H 0.07 1.21 6.95 -51.93 -0.36 0.85 15 23 H 0.28 6.23 8.29 -40.82 -0.34 5.89 15 24 H 0.17 4.64 5.58 -52.49 -0.29 4.35 15 25 H 0.11 2.16 8.06 -52.49 -0.42 1.73 15 26 H 0.11 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.11 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -27.56 239.38 -6.87 -34.43 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.23 Total: 4.95 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.44 Total: -20.67 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.18 Total: -31.37 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.56 -6.87 -34.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214515368.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.687 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds