Wall clock time and date at job start Mon Mar 30 2020 20:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38279 * 125.61324 * 2 1 4 4 C 1.39937 * 125.70162 * 0.05028 * 3 2 1 5 5 H 1.08003 * 119.99496 * 359.97438 * 4 3 2 6 6 C 1.40171 * 120.00648 * 179.97438 * 4 3 2 7 7 N 1.30757 * 119.99816 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00484 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47095 * 89.99378 * 8 6 4 10 10 H 1.48495 * 109.47209 * 209.99707 * 8 6 4 11 11 H 1.48507 * 109.46544 * 329.99523 * 8 6 4 12 12 C 1.39134 * 108.60461 * 179.79697 * 3 2 1 13 13 C 1.40932 * 107.51008 * 0.36475 * 12 3 2 14 14 C 1.40555 * 133.07042 * 179.97438 * 13 12 3 15 15 C 1.36404 * 119.84452 * 179.68338 * 14 13 12 16 16 C 1.38950 * 120.61476 * 0.02562 * 15 14 13 17 17 C 1.38134 * 120.66797 * 359.97438 * 16 15 14 18 18 F 1.35093 * 120.07385 * 180.02562 * 17 16 15 19 19 C 1.38149 * 125.61275 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.46982 * 269.96819 * 1 2 3 21 21 H 1.09002 * 109.47203 * 29.97171 * 1 2 3 22 22 H 1.09003 * 109.47173 * 149.97088 * 1 2 3 23 23 H 0.96998 * 120.00385 * 180.02562 * 7 6 4 24 24 H 1.07994 * 126.24222 * 180.26753 * 12 3 2 25 25 H 1.07998 * 120.07459 * 359.66171 * 14 13 12 26 26 H 1.07998 * 119.68678 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.66452 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1242 0.0000 4 6 1.8219 2.4498 0.0010 5 1 0.7628 2.6616 0.0014 6 6 2.7471 3.5027 0.0014 7 7 4.0293 3.2463 0.0014 8 14 2.1486 5.2722 0.0020 9 1 1.9898 5.7406 1.4022 10 1 3.1386 6.1299 -0.6976 11 1 0.8415 5.3528 -0.6982 12 6 3.6006 0.7172 0.0047 13 6 3.6130 -0.6921 -0.0009 14 6 4.6482 -1.6429 -0.0003 15 6 4.3477 -2.9734 -0.0004 16 6 3.0254 -3.4003 -0.0017 17 6 1.9899 -2.4861 -0.0023 18 9 0.7087 -2.9144 -0.0030 19 6 2.2694 -1.1231 -0.0005 20 1 -0.3633 -0.0006 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8897 -0.5143 23 1 4.6697 3.9748 0.0021 24 1 4.4659 1.3633 0.0099 25 1 5.6790 -1.3207 -0.0001 26 1 5.1451 -3.7018 0.0005 27 1 2.8050 -4.4576 -0.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214515368.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:07 Heat of formation + Delta-G solvation = -15.934098 kcal Electronic energy + Delta-G solvation = -14247.732748 eV Core-core repulsion = 11691.258196 eV Total energy + Delta-G solvation = -2556.474552 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.71533 -41.51559 -37.67976 -35.59556 -32.96162 -30.95125 -30.23838 -27.43222 -26.54440 -23.08337 -22.24513 -21.22297 -18.87000 -18.09845 -17.56695 -16.87080 -16.67093 -16.40169 -15.53510 -15.46077 -15.19978 -14.26639 -13.84435 -13.75161 -13.46399 -13.28682 -12.99523 -12.86217 -12.39158 -12.07629 -11.94713 -11.79958 -11.70222 -11.16059 -10.09396 -9.07278 -8.58430 -8.22175 -6.40945 0.35751 0.90987 1.40570 1.41398 1.56170 2.12355 2.15511 2.40238 3.09648 3.37624 3.55374 4.06247 4.12437 4.27187 4.43918 4.59598 4.67206 4.78413 5.01677 5.09447 5.13053 5.42614 5.64312 5.73882 5.87612 5.93911 6.04334 6.38472 6.69544 6.71172 6.97660 7.16001 8.29062 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.043419 B = 0.009255 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.718197 B = 3024.709268 C = 3654.282910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.522 5.522 3 C 0.242 3.758 4 C -0.466 4.466 5 H 0.089 0.911 6 C 0.030 3.970 7 N -0.807 5.807 8 Si 1.007 2.993 9 H -0.261 1.261 10 H -0.266 1.266 11 H -0.255 1.255 12 C -0.362 4.362 13 C -0.056 4.056 14 C -0.151 4.151 15 C -0.104 4.104 16 C -0.201 4.201 17 C 0.077 3.923 18 F -0.157 7.157 19 C -0.021 4.021 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.291 0.709 24 H 0.152 0.848 25 H 0.123 0.877 26 H 0.155 0.845 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -2.883 -0.100 3.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.212 5.212 3 C 0.136 3.864 4 C -0.499 4.499 5 H 0.107 0.893 6 C -0.187 4.187 7 N -0.432 5.432 8 Si 0.826 3.174 9 H -0.186 1.186 10 H -0.190 1.190 11 H -0.178 1.178 12 C -0.385 4.385 13 C -0.062 4.062 14 C -0.170 4.170 15 C -0.123 4.123 16 C -0.220 4.220 17 C 0.054 3.946 18 F -0.136 7.136 19 C -0.125 4.125 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.170 0.830 25 H 0.141 0.859 26 H 0.173 0.827 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.528 -2.799 -0.105 3.773 hybrid contribution -0.437 0.637 0.027 0.773 sum -2.965 -2.162 -0.078 3.671 Atomic orbital electron populations 1.21781 0.77150 1.03606 1.02354 1.44336 1.05662 1.03932 1.67317 1.18571 0.88903 0.86266 0.92629 1.19118 0.95675 0.88660 1.46407 0.89303 1.26880 0.94154 1.06234 0.91470 1.69774 1.03419 1.36153 1.33866 0.84823 0.79236 0.73758 0.79564 1.18586 1.19002 1.17827 1.21804 0.97127 0.91405 1.28130 1.18735 0.91536 0.95162 1.00726 1.20534 0.97641 0.92676 1.06121 1.20539 0.95726 0.95042 1.01025 1.20730 0.91537 0.98687 1.11092 1.16988 0.78803 0.89061 1.09709 1.91331 1.37001 1.90448 1.94861 1.18539 0.92183 0.87316 1.14419 0.92012 0.89682 0.90505 0.89790 0.83048 0.85913 0.82731 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.63 10.60 127.77 1.35 4.99 15 2 N -0.52 -26.11 3.24 -529.81 -1.72 -27.82 15 3 C 0.24 13.31 6.65 38.75 0.26 13.57 15 4 C -0.47 -24.05 8.96 23.15 0.21 -23.84 15 5 H 0.09 4.20 7.06 -2.91 -0.02 4.18 15 6 C 0.03 1.42 5.50 85.32 0.47 1.89 15 7 N -0.81 -41.00 10.18 21.87 0.22 -40.77 15 8 Si 1.01 35.84 29.56 68.60 2.03 37.87 15 9 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 10 H -0.27 -9.02 7.11 99.48 0.71 -8.31 15 11 H -0.25 -8.69 7.11 99.48 0.71 -7.98 15 12 C -0.36 -20.48 9.80 23.15 0.23 -20.25 15 13 C -0.06 -2.91 6.14 -21.35 -0.13 -3.04 15 14 C -0.15 -6.48 10.08 22.41 0.23 -6.25 15 15 C -0.10 -3.74 9.96 22.01 0.22 -3.52 15 16 C -0.20 -7.47 10.00 22.42 0.22 -7.24 15 17 C 0.08 3.35 7.32 22.46 0.16 3.51 15 18 F -0.16 -6.44 15.79 44.97 0.71 -5.73 15 19 C -0.02 -1.06 6.82 39.07 0.27 -0.79 15 20 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.08 3.09 7.26 -2.39 -0.02 3.07 15 22 H 0.08 2.78 6.95 -2.39 -0.02 2.77 15 23 H 0.29 13.17 8.29 -92.71 -0.77 12.40 15 24 H 0.15 8.89 5.58 -2.91 -0.02 8.88 15 25 H 0.12 4.78 8.06 -2.91 -0.02 4.76 15 26 H 0.16 4.13 8.06 -2.91 -0.02 4.11 15 27 H 0.15 4.44 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -61.14 239.38 5.92 -55.22 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.19 Total: 22.22 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.48 Total: -40.98 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.50 Total: -68.60 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.71 Total: -5.73 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -61.14 5.92 -55.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214515368.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.283 kcal (2) G-P(sol) polarization free energy of solvation -61.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds